Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1118	PP_1119	PP_1120	PP_1121	PP_1122
nitrogen source	nitrogen source nitrite 1mM	+0.1	-0.2	+0.4	+0.0	-4.5
temperature	Growth at 25C	-0.1	+0.0	+0.0	-0.1	-2.6
phage	PUT 8 MOI 1	-0.1	+0.0	+0.1	-0.1	-2.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.0	+0.2	-0.2	-0.1	-2.1
carbon source	pyruvate (C)	-0.1	-0.6	-0.2	-0.2	-1.1
pH	Growth at pH8 and (C) D-Glucose	-0.1	-0.3	+0.1	+0.3	-2.2
phage	P. putida South MOI 10	+0.2	+0.4	+0.1	-0.2	-2.5
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	+0.1	+0.0	-0.1	+0.1	-1.9
pH	pH 6	+0.1	-0.6	+0.1	+0.1	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.0	-0.1	-0.2	+0.2	-1.6
carbon source	Delta-Dodecalactone (C)	-0.0	+0.1	+0.1	+0.2	-1.7
nitrogen source	2,6-diaminopimelic (N)	+0.1	+0.5	-0.2	-0.0	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.5	+0.0	-0.2	-1.2
pH	pH 7	+0.1	-0.0	+0.2	+0.4	-1.5
carbon source	Valerolactone (C)	+0.1	+0.3	+0.2	+0.2	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.2	+0.1	+0.6	-0.3
carbon source	ferulate (C); with MOPS	+0.0	-0.1	+0.4	+0.5	-1.1
phage	P. put South MOI 10	-0.0	+0.8	-0.0	+0.5	-1.4
temperature shift	Temperature shift 30_to_4	-0.2	-0.4	-0.2	-0.4	+1.1
pH	Growth at pH7 and (C) D-Glucose	-0.0	-0.3	-0.0	-1.0	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.3	+0.6	+0.4	-1.5
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.2	+0.5	+0.5	-0.9
carbon source	D-Glucose (C)	-0.2	-0.2	-0.2	-0.4	+1.4
phage	P. putida Sci small MOI 0.1	+0.6	+0.7	+0.2	+0.5	-1.2
pH	Growth at pH8 and (C) Trisodium citrate	+0.0	-0.2	+0.1	+0.4	+1.4
stress	2-Piperidinone 3 vol%	-0.1	+0.4	-0.1	-0.1	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.0	+0.6	-0.1	-0.2	+1.6
carbon source	Delta-Nonalactone (C)	+0.1	+1.3	+0.9	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.7	-0.0	+0.5	+1.2
phage	P. putida Missley MOI 0.1	+0.6	+0.6	+0.6	+1.1	+0.2