Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1108	PP_1109	PP_1110	PP_1111	PP_1112
carbon source	D-Glucaric (C)	+0.3	-4.7	-8.1	-3.2	-0.3
carbon source	carbon source D-Glucose 55.5 mM	-0.1	-4.9	-6.3	-4.8	+0.5
carbon source	Lauric (C)	+0.1	-5.0	-3.9	-5.0	-1.6
pH	pH 4	-0.1	-5.9	-5.7	-4.5	+0.9
carbon source	carbon source Bisabolene 48.9 mM	-0.0	-5.1	-5.9	-4.7	+0.5
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.2	-4.5	-6.1	-4.2	+0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.2	-5.2	-4.9	-3.8	-0.4
carbon source	Mucic (C)	-0.0	-5.4	-4.4	-3.7	-0.9
carbon source	Mucic (C)	+0.1	-5.3	-4.1	-3.7	-1.2
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.0	-4.9	-5.2	-4.4	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.2	-5.0	-5.1	-3.7	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.2	-4.5	-5.9	-4.0	+0.6
carbon source	rac-3-Hydroxypentanoic Acid (C)	+0.2	-4.4	-5.9	-3.8	-0.1
carbon source	Lauric (C)	+0.1	-4.4	-3.9	-4.4	-1.3
carbon source	carbon source Glycerol 108.6 mM	+0.2	-4.6	-5.1	-4.8	+0.6
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.1	-5.1	-4.8	-4.5	+0.5
pH	pH 8	-0.2	-4.6	-5.7	-4.0	+0.9
pH	pH 9	-0.3	-4.7	-4.5	-4.8	+0.8
carbon source	carbon source Bisabolol 45 mM	-0.1	-4.9	-4.9	-4.1	+0.6
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.2	-4.5	-4.7	-4.2	+0.6
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.4	-4.6	-4.8	-4.0	+0.9
pH	pH 5	+0.1	-4.8	-5.1	-4.3	+1.3
carbon source	1,3-Hexanediol (C)	-0.0	-3.7	-5.9	-3.4	+0.2
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.1	-5.2	-4.9	-3.3	+0.8
carbon source	Decanoic (C)	+0.1	-5.0	-3.3	-4.0	-0.4
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.1	-4.6	-4.8	-3.3	+0.4
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+0.1	-5.0	-3.9	-4.0	+0.5
carbon source	Decanoic (C)	+0.2	-5.3	-2.3	-4.4	-0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.1	-4.2	-5.3	-3.8	+1.5
pH	pH 7	-0.4	-4.4	-3.9	-4.1	+1.1