Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1102	PP_1103	PP_1104	PP_1105	PP_1106
nitrogen source	2,6-diaminopimelic (N)	-1.0	-0.3	-0.4	-0.4	-0.0
nitrogen source	NAG (N); with MOPS	-0.6	+0.2	-0.6	-0.3	-0.3
pH	pH 7	-0.1	-0.0	-0.5	-0.1	-0.7
phage	P. putida Sci Big MOI 0.1	-0.8	-0.2	+0.1	-0.1	-0.4
carbon source	D-Glucose (C)	-0.7	-0.3	+0.1	-0.2	-0.2
nitrogen source	D-2-Aminobutyric (N)	-1.4	-0.3	+0.5	-0.2	+0.2
carbon source	Myristic (C)	-0.8	-0.2	-0.3	+0.2	+0.0
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.7	-0.1	-0.1	+0.2	-0.4
temperature shift	Temperature shift 10_to_25; with MOPS	-1.0	+0.3	-0.1	+0.1	-0.1
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.2	-0.2	+0.3	-0.1	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.4	+0.2	-0.6	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.2	-0.1	+0.0	+0.3
pH	Growth at pH9 and (C) Trisodium citrate	-0.5	-0.2	+0.4	-0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4	+0.0	+0.6	+0.0	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.8	-0.0	+0.1	+0.3	+0.4
nitrogen source	NAG (N); with MOPS	-0.5	+0.2	+0.2	-0.1	+0.5
nitrogen source	nitrogen source nitrite 0.5mM	+0.4	+0.2	+0.3	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.3	+0.5	+0.1	-0.6
no stress control	Growth with no stress	+0.2	+0.1	-0.5	+0.3	+0.3
temperature	Growth at 30C; with MOPS	+0.5	-0.2	+0.6	-0.4	-0.1
carbon source	ferulate (C); with MOPS	+0.4	-0.1	-0.4	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.1	+0.2	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	+0.5	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.1	+1.3	-0.5	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	-0.1	+0.5	-0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.1	+0.3	+0.3	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	+0.4	+0.6	+0.2	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.2	+0.3	+0.5	-0.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.6	+0.2	+0.4	-0.1	+0.5
nitrogen source	Urea (N); with MOPS	+0.7	+0.1	+0.2	+0.2	+0.6