Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1067 and PP_1068 are separated by 65 nucleotidesPP_1068 and PP_1069 overlap by 40 nucleotidesPP_1069 and PP_1070 are separated by 0 nucleotidesPP_1070 and PP_1071 are separated by 145 nucleotides PP_1067: PP_1067 - Sensor histidine kinase, at 1,221,302 to 1,223,209 _1067 PP_1068: PP_1068 - glutamate / aspartate ABC transporter - ATP binding subunit, at 1,223,275 to 1,224,045 _1068 PP_1069: PP_1069 - glutamate / aspartate ABC transporter - permease subunit, at 1,224,006 to 1,224,677 _1069 PP_1070: PP_1070 - glutamate / aspartate ABC transporter - permease subunit, at 1,224,678 to 1,225,424 _1070 PP_1071: PP_1071 - glutamate / aspartate ABC transporter - periplasmic binding protein, at 1,225,570 to 1,226,490 _1071
Group Condition PP_1067 PP_1068 PP_1069 PP_1070 PP_1071
carbon source L-Glutamic (C) -4.4 -3.4 -4.4 -4.6 -4.2
carbon source L-Glutamine (C) -3.2 -3.9 -2.3 -2.3 -3.1
carbon source L-Glutamic (C) -3.7 -2.2 -2.5 -2.0 -2.8
carbon source L-Glutamic (C) -2.2 -1.5 -1.5 -1.4 -1.7
nitrogen source DL-2-Aminobutyric (N) -3.6 -0.3 -0.2 -0.2 -1.3
nitrogen source DL-2-Aminobutyric (N) -2.9 -0.2 -0.1 -0.1 -1.8
nitrogen source L-Glutamic (N) -2.3 -0.5 -0.2 -0.4 -1.7
nitrogen source L-Glutamic (N) -1.8 -0.4 -0.3 -0.4 -1.5
phage P. putida PUT 7 MOI 1 -0.4 -0.6 -0.5 -1.6 -0.4
phage P. putida Sci Big MOI 0.1 +0.2 -1.3 -0.7 -1.5 +0.2
carbon source Delta-Decalactone (C) +0.6 -0.8 -0.8 -1.4 -0.3
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.1 -1.3 -0.2 -0.1 -0.8
carbon source Delta-Decalactone (C) +0.1 -0.8 -1.0 -0.3 -0.2
carbon source Delta-Nonalactone (C) +0.9 -0.9 -0.9 -0.5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -0.9 -0.6 +0.4 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -1.5 -0.2 -0.2 +0.7
nitrogen source D-2-Aminobutyric (N) +0.0 -1.1 +0.1 +0.7 -0.8
nitrogen source Ammonium chloride (N) +0.4 -0.9 +0.1 +0.8 -0.6
pH Valerolactone (C) pH 6.5 +0.6 -0.8 -0.2 -0.3 +0.5
stress Growth with Chloride 500 mM; with MOPS +1.8 -1.7 -0.4 -0.3 +0.8
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.5 -1.0 +0.3 +0.4 +0.5
stress Growth with Chloride 500 mM; with MOPS +1.8 -1.0 -0.5 +0.3 +0.7
carbon source 1-Pentanol (C) +1.3 +0.1 -0.2 -0.3 +0.4
stress Growth with Chloride 500 mM +1.3 -0.3 -0.1 +0.5 +0.3
stress Growth with Chloride 500 mM; with MOPS +1.8 +0.4 -0.3 +0.0 +0.4
stress Growth with Chloride 500 mM; with MOPS +1.8 -0.0 +0.1 +0.4 +0.2
stress Growth with Chloride 500 mM; with MOPS +2.0 -0.1 +0.1 +0.4 +0.5
stress Growth with Chloride 500 mM; with MOPS +1.7 +0.4 -0.1 +0.5 +0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.6 +1.3 +0.6 +0.6 +0.1
micoeukaryotes C.elegans, mixed culture-2 +0.4 +1.4 +0.7 +0.4 +0.4
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