Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1017 and PP_1018 are separated by 3 nucleotidesPP_1018 and PP_1019 are separated by 40 nucleotidesPP_1019 and PP_1020 are separated by 117 nucleotidesPP_1020 and PP_1021 overlap by 8 nucleotides PP_1017: PP_1017 - mannose/glucose ABC transporter, permease protein, at 1,160,189 to 1,161,034 _1017 PP_1018: PP_1018 - mannose/glucose ABC transporter - ATP binding subunit, at 1,161,038 to 1,162,192 _1018 PP_1019: PP_1019 - carbohydrate-selective porin, at 1,162,233 to 1,163,576 _1019 PP_1020: PP_1020 - putative glucose-6-phosphate 1-epimerase, at 1,163,694 to 1,164,548 _1020 PP_1021: PP_1021 - DNA-binding transcriptional regulator, at 1,164,541 to 1,165,404 _1021
Group Condition PP_1017 PP_1018 PP_1019 PP_1020 PP_1021
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.6 -4.7 -2.9 -0.8 +0.0
nitrogen source D-2-Aminobutyric (N) -2.8 -3.3 -1.1 -6.3 +3.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.9 -3.9 -3.1 +0.3 -0.0
pH pH 4 -3.6 -3.3 -0.3 -1.1 -0.1
nitrogen source Propandiamine (N) -3.9 -2.8 -0.8 -1.6 +0.7
pH pH 5 -3.7 -3.5 -0.0 -0.5 -0.4
nitrogen source D-2-Aminobutyric (N) -2.9 -3.0 -1.0 -4.0 +3.0
pH pH 9 -3.8 -1.8 -0.1 -1.0 -0.6
carbon source Valeric (C) -0.5 +0.1 -0.2 -6.6 +0.0
pH pH 8 -2.8 -3.0 +0.3 -1.4 -0.2
nitrogen source Propandiamine (N) -2.8 -2.5 -0.4 -0.8 +0.4
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.5 -0.8 +0.6 -3.8 -1.0
nitrogen source nitrogen source nitrate 20mM -0.8 -0.6 +0.1 -4.1 +0.1
pH pH 6 -1.7 -1.4 +0.6 -1.9 -0.2
carbon source D-Glucose (C) 1.25 mM -1.8 -1.9 -0.5 -0.1 -0.1
nitrogen source L-Leucine (N) -1.4 -1.4 -0.2 -1.3 +0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 -1.2 -1.3 -0.3 -0.0
nitrogen source nitrogen source Ammonium chloride 20mM -1.3 -1.9 +0.1 -0.5 +0.1
carbon source Soil Extract with D-Glucose 10 mM; 15C -1.7 -1.8 -0.1 -0.1 +0.3
phage P. putida PUT 7 MOI 1 -0.2 -0.8 -0.8 +0.4 -2.1
carbon source Soil Extract with D-Glucose 10 mM; 15C -1.7 -1.8 -0.1 +0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.3 +0.7 -3.5 -0.2
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -2.1 -1.7 +0.1 +0.3 +0.7
pH D-Glucose (C) pH 6 -1.4 -1.1 -0.2 +0.8 -0.4
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -2.4 -1.5 +0.1 +0.8 +0.9
pH pH 7 -1.2 -1.9 +1.3 -0.3 -0.0
carbon source D-Glucose (C) -1.9 +0.0 +0.8 -1.1 +0.4
carbon source ferulate (C); with MOPS -0.0 -0.1 +0.1 +1.4 -2.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.7 -0.3 -0.3 -0.6 +2.2
carbon source D-Mannose (C) +2.0 +2.1 -0.2 -0.6 +1.3
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