Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_1012 and PP_1013 overlap by 20 nucleotidesPP_1013 and PP_1014 are separated by 215 nucleotidesPP_1014 and PP_1015 are separated by 104 nucleotidesPP_1015 and PP_1016 are separated by 133 nucleotides PP_1012: PP_1012 - DNA-binding response regulator, at 1,154,137 to 1,154,862 _1012 PP_1013: PP_1013 - Sensor histidine kinase, at 1,154,843 to 1,156,297 _1013 PP_1014: PP_1014 - aldose-ketose isomerase, at 1,156,513 to 1,157,763 _1014 PP_1015: PP_1015 - mannose/glucose ABC transporter, glucose-binding periplasmic protein, at 1,157,868 to 1,159,154 _1015 PP_1016: PP_1016 - mannose/glucose ABC transporter, permease protein, at 1,159,288 to 1,160,196 _1016
Group Condition PP_1012 PP_1013 PP_1014 PP_1015 PP_1016
nitrogen source Propandiamine (N) -4.4 -3.6 -1.7 -4.5 -3.7
nitrogen source D-2-Aminobutyric (N) -3.6 -4.7 -1.3 -3.6 -3.4
nitrogen source D-2-Aminobutyric (N) -3.8 -2.5 -2.0 -3.6 -3.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.5 -3.6 -0.6 -3.9 -2.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.9 -3.6 -0.3 -3.9 -3.0
pH pH 4 -4.6 -2.2 -0.6 -3.2 -3.6
pH pH 5 -4.6 -2.1 -0.3 -3.3 -2.8
nitrogen source Propandiamine (N) -3.4 -1.8 -1.0 -2.3 -2.6
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -2.4 -2.2 -1.1 -2.2 -2.0
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -2.1 -2.2 -1.2 -1.8 -2.2
pH pH 9 -1.9 -1.9 -0.1 -3.3 -1.9
pH pH 8 -2.3 -0.4 -0.6 -2.6 -2.1
pH Growth at pH9 and (C) D-Glucose -1.4 -1.5 -0.8 -2.0 -2.0
pH Growth at pH9 and (C) D-Glucose -1.7 -1.5 -0.5 -2.0 -2.0
carbon source Soil Extract with D-Glucose 10 mM; 15C -2.0 -1.5 -0.4 -1.7 -1.5
carbon source Soil Extract with D-Glucose 10 mM; 15C -1.5 -1.8 -0.3 -1.7 -1.6
pH pH 6 -1.3 -0.9 -0.5 -2.1 -1.7
carbon source D-Glucose (C) 1.25 mM -1.9 -1.1 -0.3 -1.3 -1.7
carbon source M9 minimal media_noCarbon with D-Glucose 10 mM; 15C -1.4 -1.4 -0.5 -1.4 -1.4
carbon source M9 minimal media_noCarbon with D-Glucose 10 mM; 15C -1.5 -1.2 -0.5 -1.4 -1.4
nitrogen source nitrogen source Ammonium chloride 20mM -1.3 -1.4 -0.2 -1.2 -1.7
pH Growth at pH9 and (C) D-Glucose -0.7 -1.8 -0.7 -1.3 -1.2
nitrogen source L-Leucine (N) -1.1 -1.3 -0.7 -1.0 -1.4
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -1.8 -0.9 -0.4 -1.1 -1.2
nitrogen source nitrogen source Ammonium chloride 20mM -1.7 -0.9 -0.3 -1.2 -1.2
pH pH 7 -2.3 -0.1 -0.0 -1.4 -1.5
pH Growth at pH9 and (C) D-Glucose -1.4 -1.2 -0.4 -1.2 -1.1
carbon source Soil Extract with D-Glucose 10 mM; 30C -1.3 -1.3 -0.4 -1.2 -0.9
nitrogen source nitrate (N) -2.4 -0.7 -0.2 -0.6 -1.3
carbon source D-Mannose (C) +2.0 +1.5 -1.3 +2.0 +2.1
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