Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1001	PP_1002	PP_1003	PP_1004	PP_1005
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.0	-2.0	-0.3	-1.8	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.9	-3.1	-0.3	-0.5	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.4	-2.3	-0.2	-0.4	-1.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.6	-3.5	-0.1	-0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.5	-2.6	-0.4	-0.4	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.2	-1.8	-0.3	-1.4	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-3.0	-1.7	-0.2	-0.6	-0.3
r2a control	R2A control	-2.8	-2.4	-0.2	-0.2	-0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-2.4	-2.4	-0.3	-0.0	-0.6
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-2.1	-2.3	-0.2	-0.3	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-2.2	-2.0	-0.4	-0.7	-0.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-2.2	-2.2	-0.3	-0.5	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.4	-1.9	-0.4	-0.2	-0.4
nitrogen source	nitrogen source nitrite 1mM	-1.5	-0.9	+0.2	-2.4	-0.7
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-2.3	-2.4	-0.2	-0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-3.4	-1.4	-0.4	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.7	-2.1	-0.3	+0.1	-0.2
r2a control	R2A control	-2.4	-2.3	-0.5	-0.1	+0.2
r2a control	R2A control	-2.0	-2.4	-0.3	-0.1	-0.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-1.4	-3.3	-0.0	-0.2	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.8	-1.7	-0.3	+0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.6	-1.8	-0.3	-0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.7	-1.4	-0.0	-0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-1.0	+0.0	-2.5	+0.1
stress	R2A with Fusaric 120 ug/mL	-1.8	-1.8	-0.1	-0.4	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	-3.1	-1.9	+0.5	+0.9	+0.3
nitrogen source	nitrogen source nitrate 5mM	-1.5	-2.0	-0.1	-0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.7	-1.6	-0.2	+0.9	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.6	-1.4	+0.1	+0.4	+1.0
temperature shift	Temperature shift 30_to_25	+1.6	-1.4	-0.0	+1.4	+0.2