Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0992	PP_0993	PP_0994	PP_0995	PP_0996
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.1	N.D.	+0.2	-3.0	+0.0
phage	P. putida Sci Big MOI 0.1	-1.3	N.D.	-0.4	-0.8	-0.3
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.1	N.D.	+0.0	-2.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	N.D.	-0.6	-2.0	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	N.D.	-0.1	-2.4	+0.1
nitrogen source	Hippuric (N)	-0.2	N.D.	-0.4	-1.9	+0.2
phage	P. putida Sci small MOI 0.1	-1.1	N.D.	-0.5	-0.5	-0.1
carbon source	ferulate (C); with MOPS	+0.1	N.D.	+0.1	-2.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	N.D.	-0.3	-1.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	N.D.	+0.2	-1.8	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	N.D.	+0.1	-1.6	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	N.D.	-0.4	-1.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	N.D.	-0.1	-1.4	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	N.D.	+0.1	-2.2	+0.3
nitrogen source	Hippuric (N)	+0.1	N.D.	-0.1	-1.8	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	N.D.	+0.1	-1.9	-0.1
carbon source	Delta-Decalactone (C)	-0.1	N.D.	-0.1	-1.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	N.D.	-0.4	-1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	N.D.	-0.0	-1.9	+0.2
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.1	N.D.	-0.2	-1.5	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.1	N.D.	-0.4	-1.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	+0.2	-1.6	+0.1
nitrogen source	2,6-diaminopimelic (N)	-0.1	N.D.	+0.3	-1.5	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	N.D.	+0.2	-1.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	N.D.	+0.3	-1.5	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.5	N.D.	+0.4	-1.5	+0.1
pH	Growth at pH9 and (C) Trisodium citrate	+0.7	N.D.	+0.2	-1.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	N.D.	+0.3	-0.9	-0.1
carbon source	ferulate (C); with MOPS	+0.7	N.D.	+0.3	-0.7	+0.2
carbon source	carbon source D-Glucose 55.5 mM	+0.4	N.D.	+1.0	+0.4	-0.2