Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0984	PP_0986	PP_0987	PP_0988	PP_0989
nitrogen source	Hippuric (N)	-0.4	-5.6	-1.6	-5.9	-6.8
nitrogen source	Hippuric (N)	-0.1	-5.2	-1.4	-5.8	-6.6
nitrogen source	Glycine (N)	+0.3	-4.6	-0.9	-4.4	-5.6
nitrogen source	Glycine (N)	+0.1	-5.2	-0.8	-4.7	-4.0
nitrogen source	L-Threonine (N)	+0.1	-2.3	-0.8	-2.8	-4.7
nitrogen source	L-Threonine (N)	+0.0	-2.6	-0.7	-2.1	-3.1
carbon source	Delta-Undecalactone (C)	-0.8	-3.5	-0.5	-2.1	-1.5
carbon source	Beta-alanine (C)	-0.9	-1.3	-0.2	-1.5	-2.1
carbon source	Delta-Nonalactone (C)	+1.6	-1.6	+0.1	-3.9	-2.3
carbon source	Delta-Decalactone (C)	+0.3	-1.6	-0.4	-2.1	-2.1
carbon source	2-methyl-1-butanol (C)	-0.3	-1.3	-0.5	-1.5	-2.3
carbon source	Delta-Dodecalactone (C)	-0.9	-2.0	-0.4	-1.3	-1.3
carbon source	Delta-Dodecalactone (C)	-0.9	-1.3	-0.7	-1.5	-1.5
carbon source	Delta-Decalactone (C)	+0.2	-0.9	-0.2	-2.1	-2.7
carbon source	Delta-Undecalactone (C)	-0.7	-1.8	-0.4	-1.6	-0.7
carbon source	Beta-alanine (C)	-0.6	-0.9	-0.4	-1.3	-1.5
carbon source	2-methyl-1-butanol (C)	-0.3	-1.5	-0.2	-1.4	-1.3
carbon source	benzoic (C)	-0.4	-1.3	-0.4	-1.1	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-3.0	-0.4	-0.4	-0.1	-0.6
phage	P. putida PUT 7 MOI 1	+0.2	-1.2	-0.0	-0.1	-3.2
carbon source	Vanillin (C)	+0.1	-1.1	-0.2	-1.1	-2.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-1.3	-0.2	+0.3	-1.5
carbon source	Vanillic Acid (C)	+0.3	-1.1	-0.2	-1.1	-1.4
nitrogen source	NAG (N); with MOPS	-1.5	+0.3	+0.3	-0.1	-2.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.8	-1.6	-0.0	-0.1	+0.7
carbon source	Crotonic (C)	-0.5	-2.1	-0.2	-0.7	+1.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.5	-0.7	-0.3	+0.2	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.0	-0.6	-0.2	+0.1	+1.3
nitrogen source	D-2-Aminobutyric (N)	+1.8	+1.7	+0.6	+0.5	-0.3
nitrogen source	D-2-Aminobutyric (N)	+2.2	+1.0	+1.2	+0.4	+0.9