Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0982 and PP_0983 overlap by 8 nucleotidesPP_0983 and PP_0984 are separated by 146 nucleotidesPP_0984 and PP_0986 are separated by 656 nucleotidesPP_0986 and PP_0987 are separated by 27 nucleotides PP_0982: PP_0982 - Permease YjgP/YjgQ family protein, at 1,120,560 to 1,121,675 _0982 PP_0983: PP_0983 - conserved membrane protein of unknown function, at 1,121,668 to 1,122,729 _0983 PP_0984: PP_0984 - conserved membrane protein of unknown function, at 1,122,876 to 1,123,364 _0984 PP_0986: PP_0986 - aminomethyltransferase, at 1,124,021 to 1,125,142 _0986 PP_0987: PP_0987 - L-serine dehydratase, at 1,125,170 to 1,126,546 _0987
Group Condition PP_0982 PP_0983 PP_0984 PP_0986 PP_0987
nitrogen source Hippuric (N) N.D. N.D. -0.4 -5.6 -1.6
nitrogen source Hippuric (N) N.D. N.D. -0.1 -5.2 -1.4
nitrogen source Glycine (N) N.D. N.D. +0.1 -5.2 -0.8
nitrogen source Glycine (N) N.D. N.D. +0.3 -4.6 -0.9
carbon source Delta-Undecalactone (C) N.D. N.D. -0.8 -3.5 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -3.0 -0.4 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. N.D. -1.8 -1.6 -0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -2.5 -0.7 -0.3
carbon source Delta-Dodecalactone (C) N.D. N.D. -0.9 -2.0 -0.4
nitrogen source L-Threonine (N) N.D. N.D. +0.0 -2.6 -0.7
micoeukaryotes C.elegans, mixed culture-1 N.D. N.D. -2.9 -0.2 -0.1
carbon source Delta-Undecalactone (C) N.D. N.D. -0.7 -1.8 -0.4
nitrogen source L-Threonine (N) N.D. N.D. +0.1 -2.3 -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.4 -0.6 -0.9
carbon source Delta-Dodecalactone (C) N.D. N.D. -0.9 -1.3 -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -2.0 -0.6 -0.2
carbon source Crotonic (C) N.D. N.D. -0.5 -2.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.6 -0.7 -0.4
carbon source Valerolactone (C) N.D. N.D. -3.0 +0.5 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.6 -0.6 -0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.5 +0.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.1 -1.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.8 -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.6 -0.5 -0.4
carbon source D-Glucose (C) N.D. N.D. -1.8 +0.2 -0.7
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. -2.1 +0.2 +0.1
carbon source L-Leucine (C) N.D. N.D. -1.8 +0.6 +0.1
carbon source Delta-Nonalactone (C) N.D. N.D. +1.6 -1.6 +0.1
nitrogen source D-2-Aminobutyric (N) N.D. N.D. +1.8 +1.7 +0.6
nitrogen source D-2-Aminobutyric (N) N.D. N.D. +2.2 +1.0 +1.2
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