Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0970 and PP_0971 are separated by 109 nucleotidesPP_0971 and PP_0972 are separated by 16 nucleotidesPP_0972 and PP_0973 overlap by 53 nucleotidesPP_0973 and PP_0975 are separated by 369 nucleotides PP_0970: PP_0970 - Cyanate MFS transporter, at 1,109,975 to 1,111,279 _0970 PP_0971: PP_0971 - conserved protein of unknown function, at 1,111,389 to 1,111,865 _0971 PP_0972: PP_0972 - UPF0213 protein PP_0972, at 1,111,882 to 1,112,199 _0972 PP_0973: PP_0973 - Nucleoid-associated protein PP_0973, at 1,112,147 to 1,113,154 _0973 PP_0975: PP_0975 - putative DNA-binding protein HU, form N, at 1,113,524 to 1,113,805 _0975
Group Condition PP_0970 PP_0971 PP_0972 PP_0973 PP_0975
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -0.5 -1.8 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 -0.4 -1.3 -0.6 N.D.
phage P. putida Sci small MOI 0.1 +0.3 -0.1 -2.6 +0.5 N.D.
phage P. putida South MOI 10 -0.2 +0.1 -0.4 -1.0 N.D.
phage P. putida Missley MOI 0.1 -0.4 -0.7 +0.4 -0.6 N.D.
nitrogen source Urea (N); with MOPS +0.0 +0.3 -1.0 -0.3 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.1 +0.0 -1.2 +0.4 N.D.
carbon source Myristic (C) -0.1 +0.6 -1.0 -0.0 N.D.
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.1 -0.1 -1.2 +0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 -0.9 +0.2 N.D.
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.7 +0.5 +0.3 -0.6 N.D.
nitrogen source 2,6-diaminopimelic (N) +0.5 +0.4 -1.3 +0.1 N.D.
pH pH 5 +0.2 -0.8 -0.3 +0.6 N.D.
carbon source Tween 20 (C) +0.3 -0.2 -0.9 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.4 -1.1 +0.3 N.D.
pH pH 7 +0.1 -0.2 -0.6 +0.9 N.D.
pH pH 9 -0.0 -0.8 +0.1 +0.9 N.D.
pH pH 6 +0.2 -0.5 -0.7 +1.3 N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.1 -0.1 -0.6 +0.9 N.D.
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.1 -0.4 +0.6 +0.7 N.D.
temperature Growth at 30C; with MOPS +0.1 -0.3 +0.8 +0.5 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.1 +0.4 +1.0 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.4 +0.6 +0.7 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.4 -0.3 +0.9 +0.4 N.D.
nitrogen source 2,6-diaminopimelic (N) -0.1 +0.6 +0.5 +0.6 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.1 +0.5 +0.5 +0.6 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.2 +0.6 +0.6 +0.3 N.D.
nitrogen source Propandiamine (N) +0.4 +0.6 +0.4 +0.6 N.D.
carbon source Trisodium citrate (C) +0.2 +0.6 +0.8 +0.8 N.D.
nitrogen source D-2-Aminobutyric (N) -0.2 +1.0 +1.2 +2.0 N.D.
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