Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0967 and PP_0968 are separated by 115 nucleotidesPP_0968 and PP_0969 are separated by 82 nucleotidesPP_0969 and PP_0970 overlap by 11 nucleotidesPP_0970 and PP_0971 are separated by 109 nucleotides PP_0967: PP_0967 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 1,106,849 to 1,107,895 _0967 PP_0968: PP_0968 - conserved protein of unknown function, at 1,108,011 to 1,109,252 _0968 PP_0969: PP_0969 - Transcriptional regulator, GntR family, at 1,109,335 to 1,109,985 _0969 PP_0970: PP_0970 - Cyanate MFS transporter, at 1,109,975 to 1,111,279 _0970 PP_0971: PP_0971 - conserved protein of unknown function, at 1,111,389 to 1,111,865 _0971
Group Condition PP_0967 PP_0968 PP_0969 PP_0970 PP_0971
carbon source Phenylacetic (C) -7.8 +0.0 -0.1 -0.1 +0.2
carbon source Delta-Undecalactone (C) -7.7 +0.0 +0.0 +0.0 -0.1
carbon source Delta-Undecalactone (C) -7.6 +0.1 -0.1 +0.2 -0.1
temperature shift Temperature shift 30_to_25 -7.3 +0.0 +0.2 -0.0 -0.3
carbon source L-Lysine (C) -7.1 +0.0 -0.0 -0.1 -0.2
carbon source L-Lysine (C) -7.1 -0.1 -0.1 -0.0 +0.1
carbon source Delta-Dodecalactone (C) -7.1 +0.1 -0.0 +0.1 -0.3
carbon source Vanillin (C) -7.3 -0.2 +0.1 +0.1 +0.1
carbon source Protocatechuic Acid (C) -6.9 -0.0 -0.1 +0.1 -0.2
carbon source Beta-alanine (C) -6.8 -0.0 +0.1 -0.1 -0.3
carbon source Ferulic Acid (C) -7.2 +0.1 +0.2 -0.0 -0.0
temperature shift Temperature shift 30_to_25 -7.3 -0.1 +0.6 -0.1 -0.0
temperature shift Temperature shift 30_to_4 -6.9 -0.2 +0.1 +0.1 -0.0
carbon source M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB -7.0 +0.1 -0.1 +0.1 +0.0
nitrogen source nitrogen source Ammonium chloride 20mM -7.5 +0.2 +0.1 +0.2 +0.2
carbon source 1,2-Propanediol (C) -7.0 +0.1 +0.3 -0.0 -0.2
pH Growth at pH9 and (C) Trisodium citrate -7.3 -0.1 -0.0 +0.2 +0.4
carbon source Glycerol (C) -7.3 -0.0 +0.4 +0.0 +0.0
temperature shift Temperature shift 30_to_25 -7.1 -0.1 +0.4 +0.1 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) -7.1 +0.1 +0.0 +0.2 -0.0
carbon source Vanillic Acid (C) -6.9 +0.0 +0.3 +0.0 -0.2
carbon source Levulinic Acid (C) -6.8 +0.2 +0.2 +0.1 -0.2
carbon source p-Coumaric (C) -6.7 -0.1 -0.0 +0.1 +0.3
pH Growth at pH9 and (C) Trisodium citrate -6.6 -0.1 +0.2 +0.3 +0.1
pH Growth at pH9 and (C) Trisodium citrate -6.7 +0.1 +0.1 +0.1 +0.6
nitrogen source D-2-Aminobutyric (N) -6.2 +0.3 +0.3 +0.0 +0.5
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -5.6 +0.5 +0.4 -0.7 +0.5
nitrogen source D-2-Aminobutyric (N) -5.9 +0.1 +0.4 -0.2 +1.0
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -5.4 +0.7 +0.4 -0.5 +0.4
nitrogen source Propandiamine (N) -5.8 +0.5 +0.3 +0.4 +0.6
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