Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0948 and PP_0949 are separated by 18 nucleotidesPP_0949 and PP_0950 are separated by 2 nucleotidesPP_0950 and PP_0951 are separated by 12 nucleotidesPP_0951 and PP_0952 are separated by 79 nucleotides PP_0948: PP_0948 - Phosphocarrier protein HPr, at 1,092,554 to 1,092,826 _0948 PP_0949: PP_0949 - putative ATP-binding protein UPF0042, at 1,092,845 to 1,093,699 _0949 PP_0950: PP_0950 - phosphotransferase system enzyme IIA, regulation of potassium transport, at 1,093,702 to 1,094,166 _0950 PP_0951: PP_0951 - Ribosome hibernation promoting factor, at 1,094,179 to 1,094,487 _0951 PP_0952: PP_0952 - RNA polymerase sigma-54 factor, at 1,094,567 to 1,096,060 _0952
Group Condition PP_0948 PP_0949 PP_0950 PP_0951 PP_0952
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -6.7 -2.8 N.D. -6.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.6 -3.6 N.D. -4.2 N.D.
phage P. putida South MOI 10 -5.6 -5.3 N.D. +0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.9 -4.0 N.D. -2.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.6 -2.9 N.D. -4.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.8 -1.3 N.D. -6.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.0 -2.8 N.D. -4.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.5 -2.6 N.D. -3.9 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -4.9 -4.5 N.D. +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.3 -1.7 N.D. -5.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.9 -2.8 N.D. -3.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.8 -2.4 N.D. -2.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.1 -0.9 N.D. -6.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -3.4 N.D. -3.8 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 -5.3 -1.2 N.D. -2.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.6 -2.6 N.D. -2.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.8 -2.5 N.D. -3.8 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -2.0 N.D. -5.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.4 -1.5 N.D. -4.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -2.4 N.D. -4.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -2.4 N.D. -5.3 N.D.
phage P. putida Sci small MOI 0.1 -5.7 -1.2 N.D. -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -3.6 -1.6 N.D. -1.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -1.8 N.D. -4.5 N.D.
phage P. put PUT 10 MOI 10 -6.2 -0.8 N.D. +0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 -1.9 N.D. -4.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.9 -3.5 N.D. -3.2 N.D.
carbon source Delta-Nonalactone (C) +4.9 -1.9 N.D. -0.9 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +6.3 +0.3 N.D. -2.2 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +6.8 +0.8 N.D. -2.9 N.D.
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