Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_0947 and PP_0948 are separated by 27 nucleotidesPP_0948 and PP_0949 are separated by 18 nucleotidesPP_0949 and PP_0950 are separated by 2 nucleotidesPP_0950 and PP_0951 are separated by 12 nucleotides PP_0947: PP_0947 - conserved membrane protein of unknown function, at 1,091,618 to 1,092,526 _0947 PP_0948: PP_0948 - Phosphocarrier protein HPr, at 1,092,554 to 1,092,826 _0948 PP_0949: PP_0949 - putative ATP-binding protein UPF0042, at 1,092,845 to 1,093,699 _0949 PP_0950: PP_0950 - phosphotransferase system enzyme IIA, regulation of potassium transport, at 1,093,702 to 1,094,166 _0950 PP_0951: PP_0951 - Ribosome hibernation promoting factor, at 1,094,179 to 1,094,487 _0951
Group Condition PP_0947 PP_0948 PP_0949 PP_0950 PP_0951
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 -6.7 -2.8 N.D. -6.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -4.6 -3.6 N.D. -4.2
phage P. putida South MOI 10 +0.2 -5.6 -5.3 N.D. +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 -3.9 -4.0 N.D. -2.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 -2.6 -2.9 N.D. -4.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.0 -1.8 -1.3 N.D. -6.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -2.0 -2.8 N.D. -4.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -3.8 -2.4 N.D. -2.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -2.5 -2.6 N.D. -3.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -2.9 -2.8 N.D. -3.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.3 -3.4 N.D. -3.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -2.3 -1.7 N.D. -5.0
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.3 -4.9 -4.5 N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -1.1 -0.9 N.D. -6.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -1.0 -2.0 N.D. -5.1
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.1 -5.3 -1.2 N.D. -2.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.2 -2.4 N.D. -4.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 -2.6 -2.6 N.D. -2.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 -1.4 -1.5 N.D. -4.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 -1.8 -2.5 N.D. -3.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -3.6 -1.6 N.D. -1.9
phage P. putida Sci small MOI 0.1 -0.1 -5.7 -1.2 N.D. -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.1 -2.4 N.D. -5.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -0.7 -1.8 N.D. -4.5
phage P. put PUT 10 MOI 10 +0.2 -6.2 -0.8 N.D. +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +0.6 -1.9 N.D. -4.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +2.9 -3.5 N.D. -3.2
carbon source Delta-Nonalactone (C) -0.3 +4.9 -1.9 N.D. -0.9
carbon source 4-Hydroxyvalerate (C) (40mM) -0.3 +6.3 +0.3 N.D. -2.2
carbon source 4-Hydroxyvalerate (C) (40mM) -0.1 +6.8 +0.8 N.D. -2.9
remove
PP_0947
plot		 remove
PP_0948
plot		 remove
PP_0949		 remove
PP_0950
plot		 remove
PP_0951
plot