Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0943	PP_0944	PP_0945	PP_0946	PP_0947
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.3	-1.8	-0.2	-0.3
temperature	Growth at 30C; with MOPS	-0.5	-0.1	-2.5	+0.4	-0.1
carbon source	ferulate (C); with MOPS	-1.0	+0.1	-0.7	-0.4	-0.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.0	-0.4	-1.8	+0.3	+0.3
nitrogen source	D-2-Aminobutyric (N)	-1.2	+0.0	-0.6	-0.6	+0.2
temperature	Growth at 25C	-0.3	+0.2	-0.4	+0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.2	-0.3	+0.6	+0.2	+0.2
carbon source	Nonanoic (C)	-0.1	-0.3	-0.5	+0.3	-0.8
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.5	+0.5	-1.6	-0.2	+0.4
pH	pH 4	+0.5	+0.3	-1.1	-0.7	-0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.9	-0.2	+0.5	-0.4	-0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.1	+0.4	-1.6	+0.3	-0.0
phage	P. putida Sci Big MOI 0.1	+0.3	-0.8	-0.8	-0.1	+0.2
carbon source	L-Leucine (C)	-0.1	+0.0	-1.2	+0.6	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7	-0.2	+0.6	-0.6	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	+0.4	+0.4	-0.5	-0.5	-0.4
nitrogen source	NAG (N); with MOPS	-0.5	-0.9	+0.5	+0.3	-0.1
carbon source	D-Glucose (C)	+0.5	-0.2	-1.4	+0.4	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.8	-0.4	+0.3	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.5	+0.3	+0.3	+0.5
carbon source	carbon source D-Glucose 55.5 mM	+0.6	+0.6	-0.3	-0.8	+0.0
nitrogen source	nitrogen source Ammonium chloride 20mM	-0.1	-0.3	+1.2	-0.3	-0.3
carbon source	D-Glucose (C); with MOPS	+0.7	-0.4	-0.6	+0.4	+0.3
stress	Growth with Chloride 500 mM; with MOPS	-0.3	+0.4	+0.7	+0.2	-0.5
phage	P. put South MOI 10	-0.1	-0.5	+1.0	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.1	+1.5	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	-0.6	+0.8	+0.6	+0.2
nitrogen source	nitrogen source nitrite 0.5mM	+0.3	+0.1	+1.1	+0.2	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.1	-0.1	-0.1	+0.8	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.1	+0.9	+0.4	+0.6