Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0941	PP_0942	PP_0943	PP_0944	PP_0945
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2	-0.3	-1.0	-0.4	-1.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.4	-0.3	-0.2	-0.6	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.4	-0.7	-0.3	-1.8
temperature	Growth at 30C; with MOPS	+0.1	+0.2	-0.5	-0.1	-2.5
phage	P. putida PUT10 MOI 10	-1.9	-0.1	-0.1	-0.1	-0.3
nitrogen source	Urea (N)	-0.3	-0.3	-0.4	-0.1	-1.3
phage	PUT8 MOI 0.1	-1.4	+0.1	-0.4	-0.1	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.2	-0.4	-0.5	+0.5	-1.6
phage	P. put South MOI 1	-1.7	-0.0	+0.2	-0.1	-0.6
carbon source	Ethyl decanoate (C)	-0.8	-0.9	+0.4	+0.1	-0.8
phage	P. putida Missley MOI 0.1	-1.4	+0.1	-0.3	-0.6	+0.1
phage	P. putida PUT10 MOI 10	-2.0	-0.3	+0.1	-0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.1	-2.2	-0.3	+0.6
phage	P. putida Sci Big MOI 0.1	+0.1	-0.4	+0.3	-0.8	-0.8
phage	P. putida South MOI 0.1	-1.9	-0.3	+0.1	+0.1	+0.6
phage	PUT 8 MOI 1	-1.6	+0.1	+0.3	+0.3	-0.5
carbon source	ferulate (C); with MOPS	+0.4	-0.1	-1.0	+0.1	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.2	+0.1	-0.1	+0.4	-1.6
carbon source	L-Leucine (C)	-0.3	+0.7	-0.1	+0.0	-1.2
phage	P. putida South MOI 10	-1.2	-0.0	+0.4	-0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	+0.3	-0.3	-0.4	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6	+0.4	+0.0	+0.6	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	+0.1	-0.4	+0.1	+1.5
nitrogen source	nitrogen source Ammonium chloride 20mM	+0.0	-0.8	-0.1	-0.3	+1.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	+0.4	+0.4	-0.8	-0.4
nitrogen source	nitrogen source nitrite 0.5mM	-0.2	-0.8	+0.3	+0.1	+1.1
nitrogen source	nitrogen source nitrate 20mM	+0.5	-0.3	-0.7	+0.3	+0.7
nitrogen source	D-2-Aminobutyric (N)	+0.3	+0.3	+0.3	+0.5	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	+0.6	+0.2	-0.6	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.9	+0.7	+1.1	-0.1	-0.1