Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0940 and PP_0941 are separated by 57 nucleotidesPP_0941 and PP_0942 are separated by 97 nucleotidesPP_0942 and PP_0943 are separated by 253 nucleotidesPP_0943 and PP_0944 overlap by 11 nucleotides PP_0940: PP_0940 - putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD, at 1,085,030 to 1,086,469 _0940 PP_0941: PP_0941 - putative ribosome associated protein, at 1,086,527 to 1,087,048 _0941 PP_0942: PP_0942 - regulatory protease, at 1,087,146 to 1,088,504 _0942 PP_0943: PP_0943 - conserved protein of unknown function, at 1,088,758 to 1,089,150 _0943 PP_0944: PP_0944 - fumarate hydratase (class 2), at 1,089,140 to 1,090,519 _0944
Group Condition PP_0940 PP_0941 PP_0942 PP_0943 PP_0944
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.4 -0.3 -0.2 -0.6
carbon source Ethyl decanoate (C) -1.0 -0.8 -0.9 +0.1 -0.1
nitrogen source DL-2-Aminobutyric (N) -1.0 -0.2 -0.8 -0.3 -0.2
phage P. putida PUT10 MOI 10 -0.1 -2.0 -0.3 +0.1 -0.1
phage P. putida PUT10 MOI 10 -0.1 -1.9 -0.1 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 +0.2 -0.1 -2.2 -0.3
nitrogen source nitrogen source nitrate 20mM -0.6 -1.0 -0.8 +0.1 +0.1
temperature shift Temperature shift 30_to_4; with MOPS -0.6 -0.7 -0.7 +0.1 -0.2
phage P. putida South MOI 0.1 -0.1 -1.9 -0.3 +0.1 +0.1
carbon source Ethyl decanoate (C) -0.8 -0.8 -0.9 +0.4 +0.1
phage P. putida South MOI 0.1 -0.1 -1.4 -0.4 +0.0 -0.3
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.6 +0.2 -0.3 -1.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.7 -0.2 +0.0 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.5 +0.1 -0.4 +0.1
phage P. putida Missley MOI 0.1 +0.3 -1.4 +0.1 -0.3 -0.6
nitrogen source L-Valine (N) -0.7 -0.6 -0.6 +0.2 -0.1
phage PUT8 MOI 0.1 -0.1 -1.2 +0.2 -0.5 -0.1
carbon source Delta-Nonalactone (C) -0.7 -0.1 -0.9 -0.4 +0.3
phage P. put PUT 10 MOI 10 -0.2 -1.6 +0.1 +0.1 -0.1
nitrogen source 2,6-diaminopimelic (N) -0.7 +0.0 -1.0 -0.4 +0.4
carbon source Trisodium citrate (C) -1.1 -0.4 -0.2 +0.3 +0.1
micoeukaryotes C.elegans, mixed culture-1 -0.4 -0.8 -0.6 +0.4 +0.2
phage PUT 8 MOI 1 +0.2 -1.6 +0.1 +0.3 +0.3
temperature shift Temperature shift 30_to_25; with MOPS -0.2 +1.0 -0.4 -0.4 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.4 -0.1 +0.8 +0.3
nitrogen source nitrogen source nitrate 20mM +0.4 +0.5 -0.3 -0.7 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +0.8 +0.4 +0.4 -0.8
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +0.8 +0.6 +0.2 -0.6
carbon source L-Valine (C) +1.0 +0.5 +1.0 -0.2 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.8 +0.9 +0.7 +1.1 -0.1
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