Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_0938 and PP_0939 are separated by 8 nucleotidesPP_0939 and PP_0940 are separated by 2 nucleotidesPP_0940 and PP_0941 are separated by 57 nucleotidesPP_0941 and PP_0942 are separated by 97 nucleotides PP_0938: PP_0938 - conserved protein of unknown function, at 1,080,346 to 1,084,167 _0938 PP_0939: PP_0939 - Carbon-nitrogen hydrolase family protein, at 1,084,176 to 1,085,027 _0939 PP_0940: PP_0940 - putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD, at 1,085,030 to 1,086,469 _0940 PP_0941: PP_0941 - putative ribosome associated protein, at 1,086,527 to 1,087,048 _0941 PP_0942: PP_0942 - regulatory protease, at 1,087,146 to 1,088,504 _0942
Group Condition PP_0938 PP_0939 PP_0940 PP_0941 PP_0942
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.2 -0.6 -0.5 -0.4 -0.1
carbon source 3-methyl-1-butanol 0.25 vol% (C) -3.5 -0.4 +0.1 -0.7 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.0 -0.4 -0.2 -0.4 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.0 -0.2 -0.1 -0.3 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 +0.3 -0.4 -0.8 -0.1
carbon source Ethyl decanoate (C) -0.5 -0.5 -0.8 -0.8 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.8 +0.1 -0.3 -0.1 -0.3
carbon source Ethyl decanoate (C) -0.6 -0.2 -1.0 -0.8 -0.9
carbon source ferulate (C); with MOPS -2.4 -0.8 -0.2 +0.4 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -1.2 -0.7 -0.9 -0.0
carbon source Delta-Undecalactone (C) -2.5 -0.1 -0.3 +0.1 -0.1
temperature shift Temperature shift 30_to_4; with MOPS -0.4 -0.4 -0.6 -0.7 -0.7
carbon source ferulate (C); with MOPS -2.5 -0.2 +0.3 -0.6 +0.3
carbon source Delta-Undecalactone (C) -2.6 +0.1 -0.2 +0.2 -0.1
carbon source Delta-Decalactone (C) -2.2 +0.4 -0.5 +0.0 -0.4
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.6 -0.3 -0.6 +0.2 -0.3
phage P. putida PUT10 MOI 10 +0.5 -0.6 -0.1 -2.0 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 +0.4 -0.5 -1.4 -0.3
phage P. putida PUT10 MOI 10 +0.6 -0.4 -0.1 -1.9 -0.1
carbon source ferulate (C); with MOPS -2.7 +0.4 +0.1 +0.4 -0.1
nitrogen source 2,6-diaminopimelic (N) +0.5 -0.6 -0.7 +0.0 -1.0
nitrogen source nitrogen source nitrate 20mM +0.0 +0.7 -0.6 -1.0 -0.8
nitrogen source nitrogen source nitrite 0.5mM -0.5 +1.0 -0.8 -0.0 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.5 +0.0 +0.5 +0.8 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.9 +0.4 +0.5 +0.8 +0.6
pH Growth at pH6 and (C) D-Glucose -1.2 +0.5 -0.3 +0.9 +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.6 +0.6 +0.8 +0.9 +0.7
nitrogen source D-2-Aminobutyric (N) -1.4 +1.0 +0.3 +0.5 +0.0
carbon source 1,3-Butandiol (C) +2.8 -0.7 -0.2 -1.1 -0.1
carbon source L-Valine (C) +0.5 +0.3 +1.0 +0.5 +1.0
remove
PP_0938
plot		 remove
PP_0939
plot		 remove
PP_0940		 remove
PP_0941
plot		 remove
PP_0942
plot