Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0925	PP_0926	PP_0927	PP_0928	PP_0929
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.1	-0.5	-2.8	+0.0	-0.5
carbon source	3-methyl-1-butanol (C)	+0.1	-0.1	-2.2	-0.0	+0.1
phage	PUT8 MOI 0.1	-0.9	-0.3	-0.1	-1.1	+0.1
carbon source	3-methyl-1-butanol (C)	-0.2	-0.0	-1.6	-0.2	+0.0
carbon source	Lignin Monomers (C)	+0.3	-0.1	-2.1	-0.3	+0.2
carbon source	4-Aminobutyric 10 mM (C)	-1.2	+0.1	-0.7	+0.2	-0.2
carbon source	Valeric (C)	-0.8	-0.1	-0.2	+0.1	-0.4
phage	P. put PUT 10 MOI 10	-0.8	-0.0	-0.0	-0.8	+0.1
phage	PUT 8 MOI 1	-0.3	-0.1	+0.3	-1.1	-0.0
nitrogen source	NAG (N); with MOPS	+0.2	-0.1	-0.4	-0.3	-0.6
carbon source	butyrate (C)	-0.6	+0.0	+0.2	-0.2	-0.6
temperature shift	Temperature shift 10_to_25; with MOPS	-0.9	+0.0	+0.4	-0.5	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+0.1	+0.2	+0.2	-0.7
carbon source	Lignin Monomers (C)	+0.4	-0.0	-1.2	-0.1	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.1	+0.0	-0.1	+0.3	+0.1
stress	R2A with Fusaric 120 ug/mL	-0.8	-0.1	+0.1	-0.1	+0.5
carbon source	L-Arginine (C)	+0.1	+0.1	-0.9	-0.0	+0.4
carbon source	Quinic Acid (C)	+0.3	+0.2	-0.8	-0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.2	-0.1	-0.0	+0.7
carbon source	Succinic Acid (C)	+0.2	+0.5	-0.8	-0.2	+0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.3	-0.2	+0.2	-0.6	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	+0.1	+0.2	-0.7	+0.8
nitrogen source	nitrogen source Ammonium chloride 20mM	+0.7	+0.1	-0.0	+0.3	-0.3
nitrogen source	D-2-Aminobutyric (N)	+1.0	-0.2	-0.2	-0.2	+0.6
carbon source	Nonanoic (C)	+0.7	-0.3	+0.2	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3	-0.2	-0.1	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.3	+0.1	-0.0	+0.8
phage	P. putida Sci small MOI 0.1	+0.2	+0.6	+0.2	+0.3	+0.4
carbon source	L-Leucine (C)	+0.5	+0.1	+0.1	+0.4	+0.7
phage	P. putida Sci small MOI 0.1	+0.6	+0.0	+0.4	+0.3	+0.6