Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0924 and PP_0925 are separated by 160 nucleotidesPP_0925 and PP_0926 are separated by 187 nucleotidesPP_0926 and PP_0927 are separated by 56 nucleotidesPP_0927 and PP_0928 are separated by 141 nucleotides PP_0924: PP_0924 - conserved protein of unknown function, at 1,065,844 to 1,066,599 _0924 PP_0925: PP_0925 - conserved protein of unknown function, at 1,066,760 to 1,067,647 _0925 PP_0926: PP_0926 - putative Membrane protein, at 1,067,835 to 1,068,782 _0926 PP_0927: PP_0927 - aromatic amino acid transport protein, at 1,068,839 to 1,070,200 _0927 PP_0928: PP_0928 - K+-dependent Na+/Ca+ exchanger related-protein, at 1,070,342 to 1,071,385 _0928
Group Condition PP_0924 PP_0925 PP_0926 PP_0927 PP_0928
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 -0.1 -0.5 -2.8 +0.0
carbon source 3-methyl-1-butanol (C) +0.0 +0.1 -0.1 -2.2 -0.0
phage PUT8 MOI 0.1 +0.1 -0.9 -0.3 -0.1 -1.1
carbon source Lignin Monomers (C) +0.0 +0.3 -0.1 -2.1 -0.3
carbon source 3-methyl-1-butanol (C) +0.2 -0.2 -0.0 -1.6 -0.2
phage P. put PUT 10 MOI 10 -0.2 -0.8 -0.0 -0.0 -0.8
carbon source 4-Aminobutyric 10 mM (C) +0.0 -1.2 +0.1 -0.7 +0.2
phage PUT8 MOI 0.1 -0.2 -0.3 +0.1 +0.1 -0.9
phage P. putida South MOI 0.1 -0.2 +0.2 +0.1 -0.2 -1.0
phage P. putida South MOI 10 -0.4 -0.8 +0.2 +0.1 -0.2
phage PUT 8 MOI 1 +0.2 -0.3 -0.1 +0.3 -1.1
carbon source Lignin Monomers (C) +0.1 +0.4 -0.0 -1.2 -0.1
temperature shift Temperature shift 10_to_25; with MOPS +0.1 -0.9 +0.0 +0.4 -0.5
stress R2A with Fusaric 120 ug/mL +0.3 -0.8 -0.1 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -1.1 +0.0 -0.1 +0.3
carbon source Quinic Acid (C) -0.2 +0.3 +0.2 -0.8 -0.1
carbon source D-Glucose (C) -0.5 -0.5 +0.1 +0.1 +0.4
carbon source Succinic Acid (C) +0.1 +0.2 +0.5 -0.8 -0.2
phage P. put PUT 10 MOI 1 -0.2 +0.4 +0.2 -0.0 -0.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.2 +0.3 -0.2 +0.2 -0.6
pH Growth at pH6 and (C) D-Glucose -0.5 +0.4 +0.3 -0.1 +0.2
nitrogen source D-2-Aminobutyric (N) +0.2 +1.0 -0.2 -0.2 -0.2
carbon source Tween 20 (C) +0.2 +0.5 +0.3 +0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 -0.1 +0.4 +0.4 -0.2
phage P. putida South MOI 10 -0.2 +0.7 +0.3 +0.2 +0.1
carbon source carbon source Bisabolene 48.9 mM +0.5 +0.6 +0.2 -0.1 -0.0
carbon source 2-Methylbutanoic (C) +0.3 +0.7 +0.2 +0.2 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +0.9 +0.1 +0.1 -0.3
phage P. putida Sci small MOI 0.1 +0.1 +0.6 +0.0 +0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.7 +0.3 +0.1 +0.2
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