Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0914 and PP_0915 are separated by 219 nucleotidesPP_0915 and PP_0916 are separated by 266 nucleotidesPP_0916 and PP_0917 are separated by 86 nucleotidesPP_0917 and PP_0918 are separated by 49 nucleotides PP_0914: PP_0914 - GGDEF domain protein, at 1,055,990 to 1,058,071 _0914 PP_0915: PP_0915 - superoxide dismutase (Fe), at 1,058,291 to 1,058,887 _0915 PP_0916: PP_0916 - Amino acid transporter LysE, at 1,059,154 to 1,059,768 _0916 PP_0917: PP_0917 - Chromosome initiation inhibitor, at 1,059,855 to 1,060,745 _0917 PP_0918: PP_0918 - putative 3-beta hydroxysteroid dehydrogenase/isomerase family protein, at 1,060,795 to 1,061,787 _0918
Group Condition PP_0914 PP_0915 PP_0916 PP_0917 PP_0918
micoeukaryotes C.elegans, mixed culture-1 -0.5 N.D. -5.4 -1.7 -0.0
carbon source Trisodium citrate (C) -2.4 N.D. -3.8 +0.4 -0.0
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.1 N.D. -1.5 -3.6 -0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.3 N.D. -2.8 -2.0 -0.0
micoeukaryotes C.elegans, mixed culture-2 -1.0 N.D. -1.6 -2.0 -0.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.9 N.D. -2.3 -1.6 +0.4
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.3 N.D. -2.7 -1.4 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.1 N.D. -3.0 -1.5 +0.2
carbon source L-Lysine (C) -0.9 N.D. -3.1 +0.0 +0.0
carbon source Acetate Carbon Source (5mM) -3.5 N.D. +0.1 -0.6 +0.1
nitrogen source nitrate (N) -2.1 N.D. -1.5 -0.2 -0.0
carbon source 1,5-Pentanediol (C) -3.6 N.D. +0.1 +0.0 +0.0
carbon source Delta-Dodecalactone (C) -3.1 N.D. -0.3 -0.0 -0.0
carbon source Tween 20 (C) -3.7 N.D. +0.1 -0.1 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.5 N.D. -0.4 -0.3 -0.1
stress R2A with Fusaric 480 ug/mL -0.2 N.D. -2.2 -1.0 +0.4
carbon source 1-Pentanol (C) -2.9 N.D. -0.3 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -3.0 N.D. +0.5 -0.5 +0.0
nitrogen source Urea (N) -2.6 N.D. -0.6 +0.2 +0.1
stress R2A with Fusaric 480 ug/mL -0.0 N.D. -2.3 -0.5 +0.5
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -2.2 N.D. -0.6 +0.3 +0.1
nitrogen source 4-Aminobutyric (N) -2.7 N.D. +0.5 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.8 N.D. +0.9 -0.0 -0.0
pH Growth at pH9 and (C) D-Glucose -2.3 N.D. +0.8 -0.1 +0.1
carbon source Tween 20 (C) -2.6 N.D. +0.6 +0.6 +0.0
carbon source Crotonic (C) -1.8 N.D. +1.4 -0.4 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.1 N.D. +1.6 +0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.8 N.D. -1.5 -0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.5 N.D. +0.7 +1.0 -0.1
stress Geraniol 1 vol% +4.3 N.D. +0.7 +0.0 +0.0
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