Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_0913 and PP_0914 are separated by 158 nucleotidesPP_0914 and PP_0915 are separated by 219 nucleotidesPP_0915 and PP_0916 are separated by 266 nucleotidesPP_0916 and PP_0917 are separated by 86 nucleotides PP_0913: PP_0913 - conserved exported protein of unknown function, at 1,054,500 to 1,055,831 _0913 PP_0914: PP_0914 - GGDEF domain protein, at 1,055,990 to 1,058,071 _0914 PP_0915: PP_0915 - superoxide dismutase (Fe), at 1,058,291 to 1,058,887 _0915 PP_0916: PP_0916 - Amino acid transporter LysE, at 1,059,154 to 1,059,768 _0916 PP_0917: PP_0917 - Chromosome initiation inhibitor, at 1,059,855 to 1,060,745 _0917
Group Condition PP_0913 PP_0914 PP_0915 PP_0916 PP_0917
micoeukaryotes C.elegans, mixed culture-1 -0.7 -0.5 N.D. -5.4 -1.7
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.1 -0.1 N.D. -1.5 -3.6
carbon source Trisodium citrate (C) -0.4 -2.4 N.D. -3.8 +0.4
stress R2A with Fusaric 480 ug/mL -2.2 -0.2 N.D. -2.2 -1.0
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.5 -0.3 N.D. -2.8 -2.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -2.3 -2.5 N.D. -0.4 -0.3
micoeukaryotes C.elegans, mixed culture-2 -0.7 -1.0 N.D. -1.6 -2.0
stress R2A with Fusaric 480 ug/mL -2.4 -0.0 N.D. -2.3 -0.5
stress R2A with Fusaric 480 ug/mL -2.3 -0.0 N.D. -1.4 -1.2
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.4 -0.3 N.D. -2.7 -1.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.1 -0.9 N.D. -2.3 -1.6
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.4 +0.1 N.D. -3.0 -1.5
carbon source Acetate Carbon Source (5mM) -0.7 -3.5 N.D. +0.1 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.8 -1.7 N.D. -0.8 -0.2
stress R2A with Fusaric 480 ug/mL -2.0 -0.2 N.D. -1.0 -1.0
stress R2A with Fusaric 480 ug/mL -1.6 -0.2 N.D. -1.4 -1.0
carbon source L-Lysine (C) -0.0 -0.9 N.D. -3.1 +0.0
carbon source 1,5-Pentanediol (C) -0.2 -3.6 N.D. +0.1 +0.0
carbon source Tween 20 (C) +0.0 -3.7 N.D. +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -3.0 N.D. +0.5 -0.5
nitrogen source nitrate (N) +0.5 -2.1 N.D. -1.5 -0.2
carbon source L-Phenylalanine 5 mM (C) -0.7 -2.5 N.D. +0.0 +0.6
pH pH 4 -1.9 -1.1 N.D. +0.5 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 -2.8 N.D. +0.9 -0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 +1.1 N.D. -1.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 +1.8 N.D. -1.5 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -2.1 N.D. +1.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 +1.5 N.D. +0.6 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 +1.5 N.D. +0.7 +1.0
stress Geraniol 1 vol% +0.1 +4.3 N.D. +0.7 +0.0
remove
PP_0913
plot		 remove
PP_0914
plot		 remove
PP_0915		 remove
PP_0916
plot		 remove
PP_0917
plot