Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0911 and PP_0912 are separated by 13 nucleotidesPP_0912 and PP_0913 are separated by 36 nucleotidesPP_0913 and PP_0914 are separated by 158 nucleotidesPP_0914 and PP_0915 are separated by 219 nucleotides PP_0911: PP_0911 - conserved protein of unknown function, at 1,053,476 to 1,053,862 _0911 PP_0912: PP_0912 - conserved protein of unknown function, at 1,053,876 to 1,054,463 _0912 PP_0913: PP_0913 - conserved exported protein of unknown function, at 1,054,500 to 1,055,831 _0913 PP_0914: PP_0914 - GGDEF domain protein, at 1,055,990 to 1,058,071 _0914 PP_0915: PP_0915 - superoxide dismutase (Fe), at 1,058,291 to 1,058,887 _0915
Group Condition PP_0911 PP_0912 PP_0913 PP_0914 PP_0915
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 -0.4 -2.3 -2.5 N.D.
carbon source Acetate Carbon Source (5mM) -0.1 -0.1 -0.7 -3.5 N.D.
carbon source 1,5-Pentanediol (C) -0.0 -0.0 -0.2 -3.6 N.D.
carbon source Tween 20 (C) -0.1 +0.0 +0.0 -3.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 -0.1 -1.8 -1.7 N.D.
carbon source L-Phenylalanine 5 mM (C) +0.1 -0.4 -0.7 -2.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.1 +0.1 -0.6 -3.0 N.D.
carbon source 1-Pentanol (C) -0.2 +0.0 -0.2 -2.9 N.D.
carbon source D-Glucaric (C) +0.1 -0.1 -0.8 -2.3 N.D.
carbon source Trisodium citrate (C) -0.2 -0.0 -0.4 -2.4 N.D.
pH Growth at pH8 and (C) Trisodium citrate +0.2 -0.4 -0.3 -2.6 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.2 +0.2 -3.0 -0.0 N.D.
carbon source Delta-Dodecalactone (C) +0.2 -0.0 -0.0 -3.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 -0.0 -0.5 -2.4 N.D.
carbon source L-Phenylalanine 5 mM (C) +0.2 -0.1 -0.3 -2.6 N.D.
pH pH 4 +0.4 -0.1 -1.9 -1.1 N.D.
nitrogen source 4-Aminobutyric (N) +0.0 -0.1 +0.2 -2.7 N.D.
carbon source Tween 20 (C) -0.3 +0.3 -0.0 -2.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 +0.0 +0.2 -2.1 N.D.
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.2 -0.5 -2.1 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 -0.2 +0.3 -2.8 N.D.
nitrogen source 4-Aminobutyric (N) +0.0 +0.2 +0.5 -2.6 N.D.
nitrogen source nitrate (N) +0.3 +0.3 +0.5 -2.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -0.1 -1.4 +1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.4 -1.6 +1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.1 -1.2 +1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.2 -0.8 +1.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.4 -0.1 +2.3 N.D.
lb LB +0.2 +0.2 +0.2 +2.5 N.D.
stress Geraniol 1 vol% +0.1 +0.1 +0.1 +4.3 N.D.
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