Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0910	PP_0911	PP_0912	PP_0913	PP_0914
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.6	+0.2	-0.4	-2.3	-2.5
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-3.8	-0.2	+0.2	-3.0	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.2	+0.1	-0.1	-1.8	-1.7
stress	R2A with Fusaric 480 ug/mL	-2.6	-0.2	-0.1	-2.3	-0.0
stress	R2A with Fusaric 480 ug/mL	-2.7	-0.3	+0.3	-2.2	-0.2
pH	pH 4	-2.0	+0.4	-0.1	-1.9	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-2.5	-0.1	-0.1	-1.7	-0.2
carbon source	Acetate Carbon Source (5mM)	+0.0	-0.1	-0.1	-0.7	-3.5
stress	R2A with Fusaric 480 ug/mL	-2.1	-0.0	+0.1	-2.0	-0.2
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-2.3	-0.0	-0.1	-1.9	+0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.6	-0.2	-0.5	-2.1	+0.3
carbon source	1,5-Pentanediol (C)	-0.2	-0.0	-0.0	-0.2	-3.6
stress	R2A with Fusaric 480 ug/mL	-1.9	+0.2	+0.2	-2.4	-0.0
carbon source	L-Phenylalanine 5 mM (C)	-0.4	+0.1	-0.4	-0.7	-2.5
carbon source	M9 minimal media_noCarbon with D-Glucose 10 mM; 15C	-1.1	+0.0	-0.0	-1.0	-1.8
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-2.1	+0.0	-0.0	-2.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3	+0.1	+0.1	-0.6	-3.0
carbon source	Tween 20 (C)	-1.1	-0.3	+0.3	-0.0	-2.6
carbon source	Tween 20 (C)	+0.1	-0.1	+0.0	+0.0	-3.7
stress	R2A with Fusaric 480 ug/mL	-2.0	-0.0	+0.2	-1.6	-0.2
carbon source	Vanillin (C)	-1.5	+0.3	-0.1	-1.3	-1.0
carbon source	carbon source Glycerol 108.6 mM	-1.9	+0.1	+0.2	-1.2	-0.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.6	-0.1	+0.1	-2.1	+0.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-2.0	-0.1	-0.0	-1.6	+0.6
anaerobic m9	anaerobic M9	-2.0	+0.2	-0.1	-1.3	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.4	+0.4	-0.2	+0.3	-2.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7	-0.2	-0.1	-1.4	+1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.4	-0.4	-1.6	+1.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.2	+0.4	-0.1	+2.3
stress	Geraniol 1 vol%	-0.5	+0.1	+0.1	+0.1	+4.3