Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0905	PP_0906	PP_0907	PP_0908	PP_0909
stress	R2A with Fusaric 480 ug/mL	-0.1	-0.0	+0.0	-2.7	-3.5
stress	R2A with Fusaric 480 ug/mL	-0.0	+0.0	-0.2	-2.9	-2.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.2	+0.2	+0.1	-2.6	-2.1
stress	R2A with Fusaric 480 ug/mL	-0.3	+0.2	-0.3	-2.0	-2.7
stress	R2A with Fusaric 480 ug/mL	+0.7	-0.1	-0.1	-2.7	-2.8
stress	R2A with Fusaric 480 ug/mL	-0.2	+0.1	-0.1	-2.4	-2.1
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-2.2	+0.1	+0.1	-1.1	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7	-0.0	+0.1	-2.3	-2.2
carbon source	ferulate (C); with MOPS	-2.9	+0.3	+0.0	-0.4	-0.7
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.8	+0.1	+0.1	-1.5	-1.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3	-0.1	+0.1	-2.0	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.1	-0.0	-2.1	-1.7
stress	R2A with Fusaric 480 ug/mL	+1.3	+0.1	-0.0	-2.5	-2.5
nitrogen source	2,6-diaminopimelic (N)	-2.5	+0.0	-0.1	-0.1	-0.8
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-1.1	-0.1	-0.2	-0.9	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.9	+0.1	-0.2	+0.2	-0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2	-0.1	-0.2	-1.2	-1.3
phage	P. put South MOI 10	-2.9	+0.0	-0.1	+0.0	+0.0
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB	-0.0	+0.1	+0.0	-1.3	-1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.0	+0.1	-1.2	-1.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5	+0.1	+0.1	-0.7	-1.2
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.3	+0.0	-0.2	-1.0	-1.2
carbon source	ferulate (C); with MOPS	-0.7	+0.2	+0.2	-1.4	-0.4
micoeukaryotes	C.elegans, mixed culture-1	+0.3	+0.1	-0.1	-1.2	-1.0
carbon source	Trisodium citrate (C)	-1.8	-0.3	-0.4	+0.3	+0.3
phage	P. putida Sci Big MOI 0.1	-1.7	+0.0	-0.2	-0.5	+0.4
nitrogen source	Urea (N); with MOPS	-1.6	+0.2	+0.3	-0.2	-0.5
pH	Growth at pH6 and (C) D-Glucose	-2.0	-0.1	-0.0	-0.1	+0.5
pH	pH 4	+0.5	+0.1	+0.4	-1.0	-1.4
carbon source	acetate (C)	+1.0	-0.0	-0.0	-0.7	-1.0