Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0902 and PP_0903 are separated by 107 nucleotidesPP_0903 and PP_0904 are separated by 3 nucleotidesPP_0904 and PP_0905 overlap by 1 nucleotidesPP_0905 and PP_0906 are separated by 105 nucleotides PP_0902: PP_0902 - integral membrane sensor signal transduction histidine kinase, at 1,042,191 to 1,043,501 _0902 PP_0903: PP_0903 - conserved protein of unknown function, at 1,043,609 to 1,044,289 _0903 PP_0904: PP_0904 - InaA protein, at 1,044,293 to 1,044,994 _0904 PP_0905: PP_0905 - conserved exported protein of unknown function, at 1,044,994 to 1,045,227 _0905 PP_0906: PP_0906 - putative Multidrug efflux RND transporter, at 1,045,333 to 1,048,377 _0906
Group Condition PP_0902 PP_0903 PP_0904 PP_0905 PP_0906
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.9 -1.0 -1.2 -0.4 +0.1
pH D-Glucose (C) pH 6 -6.0 -0.0 +0.0 -1.3 -0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -5.1 -0.5 -1.2 -0.0 +0.0
carbon source ferulate (C); with MOPS -0.1 -2.0 -1.5 -2.9 +0.3
carbon source ferulate (C); with MOPS -0.3 -2.6 -2.6 -0.7 +0.2
pH D-Glucose (C) pH 6 -5.7 +0.2 -0.1 +0.0 -0.0
carbon source 3-methyl-1-butanol 0.25 vol% (C) -3.2 -1.8 +0.1 -0.5 +0.1
pH D-Glucose (C) pH 6.5 -3.3 -0.3 -0.5 -1.1 -0.0
carbon source ferulate (C); with MOPS -0.4 -1.0 -2.4 -1.1 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.6 -0.3 -0.7 +0.2 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.3 -0.3 -1.3 +0.0 -0.3
pH pH 4 -4.6 -0.4 +0.2 +0.5 +0.1
pH D-Glucose (C) pH 6.5 -4.0 -0.1 -0.2 +0.4 +0.1
pH pH 5 -4.2 -0.3 +0.2 +0.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.4 +0.4 -2.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.7 -1.4 -0.8 +0.4 +0.1
carbon source Mucic (C) -3.4 +0.6 +0.2 -0.7 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.6 -0.5 -0.8 +0.6 +0.1
phage P. put South MOI 10 -0.2 -0.4 +0.2 -2.9 +0.0
carbon source DL-2-Aminoadipic 10 mM (C) -1.7 -0.7 -0.2 -0.5 +0.1
carbon source Mucic (C) -3.5 +0.3 -0.0 +0.6 +0.0
pH Growth at pH6 and (C) D-Glucose +0.6 -0.1 +0.5 -2.0 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.3 +0.7 +1.4 -1.2 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.3 +0.5 +1.4 +0.7 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.9 +0.6 +1.7 +0.1 +0.1
phage P. putida Sci small MOI 0.1 +0.1 +1.3 -0.4 +1.4 -0.3
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.8 +4.5 +1.3 +0.6 +0.2
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.8 +4.2 +2.4 +0.2 +0.2
stress R2A with Polymyxin B sulfate 0.001 mg/ml -1.0 +4.9 +2.1 +1.1 +0.1
stress R2A with Polymyxin B sulfate 0.001 mg/ml -1.0 +5.1 +2.7 +1.3 +0.0
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