Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_0893 and PP_0894 are separated by 30 nucleotidesPP_0894 and PP_0895 are separated by 115 nucleotidesPP_0895 and PP_0896 overlap by 4 nucleotidesPP_0896 and PP_0897 are separated by 115 nucleotides PP_0893: PP_0893 - ThiJ/PfpI family protein, at 1,035,164 to 1,035,751 _0893 PP_0894: PP_0894 - conserved protein of unknown function, at 1,035,782 to 1,036,180 _0894 PP_0895: PP_0895 - conserved protein of unknown function, at 1,036,296 to 1,036,886 _0895 PP_0896: PP_0896 - Carbon-nitrogen hydrolase family protein, at 1,036,883 to 1,037,755 _0896 PP_0897: PP_0897 - Fumarate hydratase, class I, at 1,037,871 to 1,039,394 _0897
Group Condition PP_0893 PP_0894 PP_0895 PP_0896 PP_0897
nitrogen source 2,6-diaminopimelic (N) -3.3 -0.2 -0.2 -1.1 N.D.
carbon source butyrate (C) -4.5 -0.1 -0.0 +0.3 N.D.
pH Growth at pH6 and (C) Trisodium citrate -4.2 -0.1 -0.1 +0.3 N.D.
phage P. putida Sci small MOI 0.1 -2.4 -0.6 -1.1 +0.2 N.D.
temperature Growth at 25C -2.4 -0.4 -0.6 +0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.7 -0.1 -0.3 -0.2 N.D.
phage P. putida Missley MOI 0.1 -1.6 +0.1 -0.1 -0.4 N.D.
carbon source carbon source 4-vinylphenol 0.1 mM -1.5 +0.1 -0.2 -0.3 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.7 -0.1 -0.1 +0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.8 -0.1 -0.1 +0.2 N.D.
nitrogen source Ammonium chloride (N) -1.2 -0.3 +0.1 -0.4 N.D.
carbon source 2,3-Butanediol (C) -1.7 +0.2 -0.1 -0.0 N.D.
pH pH 5 -1.6 +0.1 -0.2 +0.1 N.D.
carbon source Nonanoic (C) -1.1 +0.2 -0.4 -0.3 N.D.
phage P. putida Sci Big MOI 0.1 +0.3 -0.7 -0.5 -0.6 N.D.
carbon source ferulate (C); with MOPS -1.3 -0.5 -0.6 +0.8 N.D.
carbon source acetate (C) -2.0 +0.0 +0.2 +0.3 N.D.
carbon source 3-methyl-1-butanol 0.25 vol% (C) -1.3 -0.1 -0.1 +0.6 N.D.
temperature Growth at 30C; with MOPS -1.0 -0.3 -0.1 +0.4 N.D.
pH pH 9 -1.1 +0.3 -0.3 +0.2 N.D.
nitrogen source nitrate (N) -0.8 -0.7 -0.4 +1.1 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM -0.7 +0.3 -0.4 +0.3 N.D.
nitrogen source Urea (N); with MOPS -1.2 -0.1 +0.6 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 +0.4 -0.2 +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.3 +0.5 +0.4 N.D.
nitrogen source nitrogen source nitrite 1mM +0.4 +0.7 +0.0 -0.8 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM +0.6 +0.1 -0.3 +0.7 N.D.
temperature Growth at 30C; with MOPS +0.8 +0.2 -0.2 +1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +0.8 +0.3 -0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.8 +0.2 +0.5 +0.0 N.D.
remove
PP_0893
plot		 remove
PP_0894
plot		 remove
PP_0895		 remove
PP_0896
plot		 remove
PP_0897
plot