Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0882 and PP_0883 are separated by 54 nucleotidesPP_0883 and PP_0884 are separated by 228 nucleotidesPP_0884 and PP_0885 are separated by 146 nucleotidesPP_0885 and PP_0886 are separated by 380 nucleotides PP_0882: PP_0882 - dipeptide ABC transporter - periplasmic binding protein, at 1,022,078 to 1,023,712 _0882 PP_0883: PP_0883 - glycine-glutamate dipeptide porin, at 1,023,767 to 1,025,146 _0883 PP_0884: PP_0884 - dipeptide ABC transporter - periplasmic binding protein, at 1,025,375 to 1,026,967 _0884 PP_0885: PP_0885 - dipeptide ABC transporter - periplasmic binding protein, at 1,027,114 to 1,028,739 _0885 PP_0886: PP_0886 - conserved exported protein of unknown function, at 1,029,120 to 1,029,836 _0886
Group Condition PP_0882 PP_0883 PP_0884 PP_0885 PP_0886
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.4 -0.3 -0.4 -0.5
temperature Growth at 25C -0.2 -0.1 -0.2 -0.2 -1.1
carbon source Valerolactone (C) -0.1 -0.3 -0.1 -0.6 -0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.4 -0.2 -0.4 -0.2
phage P. putida South MOI 0.1 +0.1 -0.0 -0.3 -0.4 -0.9
nitrogen source NAG (N); with MOPS +0.5 -0.5 -0.4 +0.3 -1.0
stress Growth with Chloride 200 mM; with MOPS +0.3 +0.1 -0.1 -0.0 -1.4
carbon source D-Glucose (C) +0.3 +0.1 -0.2 -0.4 -0.8
carbon source Valerolactone (C) +0.3 -0.4 -0.2 -0.8 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 +0.4 +0.2 -0.2 -0.5
phage P. putida Sci small MOI 0.1 +0.2 +0.2 -0.2 +0.1 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.6 -0.5 -0.1 +0.4
carbon source Crotonic (C) +0.4 +0.1 +0.0 +0.1 -1.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.4 +0.2 -0.3 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.2 -0.0 -0.7 -0.2 +0.5
pH pH 4 +0.3 +0.3 +0.4 -0.2 -0.9
carbon source carbon source 4-vinylphenol 0.1 mM +0.7 +0.2 -0.2 -0.2 -0.5
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.6 +0.2 +0.4 -0.3 -0.7
pH pH 5 +0.6 +0.2 +0.1 -0.2 -0.5
nitrogen source D-2-Aminobutyric (N) +0.1 +0.3 -0.4 -0.5 +0.9
micoeukaryotes C.elegans, mixed culture-2 +0.7 +0.2 +0.4 -0.2 -0.5
pH pH 9 +0.6 +0.3 +0.5 -0.0 -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.4 +0.1 +0.2 +1.0
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.2 +0.1 +0.1 -0.2 +1.1
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.7 +0.3 +0.6 +0.3 -0.3
pH Growth at pH9 and (C) Trisodium citrate +0.7 +0.0 +0.1 +0.3 +0.8
carbon source 1-Pentanol (C) +0.1 +0.6 +0.4 +0.8 -0.1
r2a control with 0.2% methanol R2A control with 0.2% methanol +0.5 +0.3 +0.3 +0.5 +0.2
micoeukaryotes C.elegans, mixed culture-1 +0.7 +0.4 +0.4 +0.2 +0.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.5 +0.2 +0.7 +0.5 +0.1
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