Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_0880	PP_0881	PP_0882	PP_0883	PP_0884
carbon source	L-Isoleucine (C)	-2.1	-2.5	-0.2	-0.3	-0.1
carbon source	L-Isoleucine (C)	-2.1	-2.1	-0.1	-0.2	+0.0
nitrogen source	D-2-Aminobutyric (N)	-1.8	-1.6	-0.6	-0.0	-0.4
carbon source	L-Leucine (C)	-1.9	-1.8	+0.0	-0.1	-0.0
carbon source	Ferulic Acid (C)	-2.4	-0.7	-0.3	+0.0	-0.1
carbon source	L-Lysine 10 mM (C)	-1.7	-1.3	+0.2	-0.3	-0.0
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-1.4	-1.1	-0.2	-0.0	-0.0
carbon source	L-Alanine (C)	-1.4	-1.9	+0.2	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.7	-0.8	-0.4	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-1.8	-0.1	-0.0	-0.3
carbon source	3-methyl-1-butanol (C)	-1.2	-1.1	-0.1	+0.1	-0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.8	-0.6	-0.0	+0.0	+0.0
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.4	-0.9	+0.1	-0.1	-0.0
carbon source	L-Leucine (C)	-0.7	-1.1	-0.6	+0.1	+0.1
nitrogen source	D-2-Aminobutyric (N)	-1.4	-0.5	+0.1	+0.3	-0.4
carbon source	D-Glucose (C)	-2.3	+0.1	+0.3	+0.1	-0.2
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-1.4	-0.6	+0.2	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-1.0	-0.5	-0.4	-0.2
pH	Growth at pH7 and (C) D-Glucose	-2.1	+0.7	+0.4	-0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.5	+0.2	-0.6	-0.5
pH	pH 9	-1.1	-1.1	+0.6	+0.3	+0.5
pH	pH 4	+0.1	-1.7	+0.3	+0.3	+0.4
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.7	-0.7	+0.6	+0.3	+0.1
carbon source	Hexanoic (C)	+1.4	+1.1	-0.1	+0.3	+0.1
micoeukaryotes	C.elegans, mixed culture-2	+0.8	+0.8	+0.7	+0.2	+0.4
carbon source	Delta-Nonalactone (C)	+1.5	+1.2	+0.2	+0.2	-0.1
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.6	+0.8	+0.7	+0.3	+0.6
micoeukaryotes	C.elegans, mixed culture-1	+1.1	+0.9	+0.7	+0.4	+0.4
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+2.1	+1.7	+0.3	-0.1	-0.1
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+1.4	+1.3	+0.5	+0.2	+0.7