Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0858	PP_0859	PP_0860	PP_0861	PP_0862
nitrogen source	D-2-Aminobutyric (N)	+0.1	-1.8	-0.5	+0.0	-0.4
nitrogen source	D-2-Aminobutyric (N)	-0.2	-1.2	-0.2	+0.1	-0.6
temperature	Growth at 30C; with MOPS	-0.4	-0.8	-0.4	+0.1	-0.3
pH	Growth at pH7 and (C) D-Glucose	-0.2	-0.5	-0.5	-0.1	-0.3
carbon source	carbon source D-Glucose 55.5 mM	-0.2	-0.4	-0.3	+0.0	-0.5
micoeukaryotes	C.elegans, mixed culture-1	-0.3	-0.9	-0.1	+0.1	-0.1
temperature shift	Temperature shift 10_to_21; with MOPS	+0.1	-0.7	-0.2	-0.1	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.1	-0.4	-0.4	+0.1	-0.5
pH	pH 8	-0.0	-0.4	-0.5	+0.2	-0.3
nitrogen source	NAG (N); with MOPS	-0.1	+0.1	-0.2	+0.1	-1.0
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.3	-0.8	+0.1	+0.2	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.2	-0.3	-0.2	+0.1	-0.8
carbon source	pyruvate (C)	+0.2	-0.4	+0.1	-0.0	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.1	-0.8	-0.4	-0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.3	-0.4	+0.0	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	-0.1	+0.5	-0.2	+0.1	-0.6
carbon source	D-Glucose (C)	+0.2	-0.5	+0.2	+0.3	+0.3
r2a control	R2A control	-0.1	-0.4	+0.3	+0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.7	-0.2	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.2	+0.2	+0.1	+0.5
stress	Butanol 0.6 vol%	+0.1	-0.3	+0.3	+0.2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+0.7	-0.1	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+0.5	+0.5	+0.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	+0.5	+0.4	+0.2	-0.2
carbon source	Hexanoic (C)	+0.5	+0.7	+0.2	+0.0	+0.2
carbon source	Levulinic Acid (C)	+0.5	+1.1	+0.0	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.9	+0.3	-0.2	+0.4
carbon source	Levulinic Acid (C)	+0.6	+1.2	-0.0	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.3	+0.6	+0.1	+0.5
carbon source	Hexanoic (C)	+0.9	+2.1	+0.0	-0.0	+0.3