Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0850 and PP_0851 are separated by 8 nucleotidesPP_0851 and PP_0852 overlap by 4 nucleotidesPP_0852 and PP_0853 are separated by 3 nucleotidesPP_0853 and PP_0854 are separated by 25 nucleotides PP_0850: PP_0850 - Dual-specificity RNA methyltransferase RlmN, at 984,085 to 985,230 _0850 PP_0851: PP_0851 - Type IV pili biogenesis protein PilF, at 985,239 to 986,006 _0851 PP_0852: PP_0852 - Transcriptional regulator, Cro/CI family, at 986,003 to 987,010 _0852 PP_0853: PP_0853 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 987,014 to 988,123 _0853 PP_0854: PP_0854 - Histidine--tRNA ligase, at 988,149 to 989,438 _0854
Group Condition PP_0850 PP_0851 PP_0852 PP_0853 PP_0854
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.6 -0.1 -6.2 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.2 +0.9 -3.7 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.8 +0.6 -3.6 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.4 +0.6 -4.0 N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.2 -0.0 -2.6 N.D. N.D.
carbon source Delta-Undecalactone (C) -0.3 +0.1 -3.4 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 -0.2 -1.8 N.D. N.D.
stress Geraniol 1 vol% -0.8 +0.1 -2.7 N.D. N.D.
carbon source Octanoic (C) +0.1 -0.3 -3.1 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 +0.1 -2.2 N.D. N.D.
carbon source Myristic (C) -0.5 -0.3 -2.6 N.D. N.D.
carbon source L-tyrosine 5 mM (C) -0.5 +0.1 -2.9 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 +0.1 -1.9 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 +0.4 -3.1 N.D. N.D.
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL +0.1 -0.3 -2.6 N.D. N.D.
carbon source Delta-Undecalactone (C) +0.2 +0.0 -3.0 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 -0.2 -1.4 N.D. N.D.
pH pH 4 -0.1 +0.0 -2.6 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 +0.1 -2.1 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 +0.0 -2.2 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 +0.2 -2.9 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5 +0.3 -2.3 N.D. N.D.
nitrogen source D-2-Aminobutyric (N) +0.9 -0.3 -3.1 N.D. N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.8 +0.3 -2.0 N.D. N.D.
carbon source Delta-Decalactone (C) -0.1 +0.4 -2.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 +0.3 -1.8 N.D. N.D.
carbon source 2,3-Butanediol (C) +0.4 -0.2 -2.2 N.D. N.D.
nitrogen source D-2-Aminobutyric (N) +0.8 +0.1 -2.2 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) +1.6 +0.1 +1.0 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) +1.6 +0.0 +1.4 N.D. N.D.
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