Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_0828	PP_0829	PP_0830	PP_0831	PP_t68
nitrogen source	Ammonium chloride (N)	-1.2	+0.2	-0.5	-0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	+0.0	-0.6	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.1	+0.0	-0.9	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-0.2	-0.2	-0.9	N.D.
temperature shift	Temperature shift 10_to_30; with MOPS	-0.8	-0.0	+0.3	-1.1	N.D.
attachment on pdms	attachment on PDMS; 2 hours	-0.1	-0.0	-0.9	-0.5	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	+0.2	-1.2	N.D.
nitrogen source	nitrate (N)	-0.2	-0.1	+0.0	-1.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.0	+0.1	-1.1	N.D.
temperature shift	Temperature shift 30_to_25; with MOPS	-0.4	+0.1	+0.1	-0.9	N.D.
nitrogen source	Propandiamine (N)	-0.5	-0.1	+0.1	-0.7	N.D.
biofilm mediium pdms	biofilm mediium PDMS; 7 hours	-0.1	-0.0	+0.2	-1.1	N.D.
carbon source	D-Glucose (C)	+0.3	-0.0	-0.4	-0.9	N.D.
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.3	+0.2	+0.1	-0.8	N.D.
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.2	-0.3	+0.4	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	-0.1	-0.2	-0.9	N.D.
carbon source	carbon source Glycerol 108.6 mM	-0.3	-0.5	+0.5	-0.1	N.D.
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.2	-0.1	+0.5	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.2	-0.2	-0.7	N.D.
stress	R2A with Fusaric 120 ug/mL	+0.2	-0.3	+0.4	-0.5	N.D.
pH	pH 4	-0.2	-0.2	+0.8	-0.4	N.D.
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.3	+0.2	+0.3	-0.6	N.D.
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.0	-0.1	+0.8	-0.5	N.D.
temperature shift	Temperature shift 30_to_21; with MOPS	+0.6	-0.1	+0.5	-0.7	N.D.
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.5	-0.2	+0.7	+0.3	N.D.
pH	pH 9	-0.1	-0.3	+1.0	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	+0.5	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.4	+0.5	+0.2	N.D.
carbon source	D-Glucose (C)	+0.6	+0.2	+0.3	-0.4	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.3	+0.9	+0.3	N.D.