Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0825	PP_0826	PP_0827	PP_0828	PP_0829
pH	Growth at pH6 and (C) D-Glucose	-0.2	+0.1	-2.5	+0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	+0.1	-1.0	-1.0	-0.0
carbon source	ferulate (C); with MOPS	-1.6	-0.1	-0.1	-0.4	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2	-0.2	-1.5	-0.0	-0.1
nitrogen source	Ammonium chloride (N)	-0.2	+0.2	-0.8	-1.2	+0.2
carbon source	L-Phenylalanine 5 mM (C)	-1.2	-0.3	-0.2	+0.2	-0.1
carbon source	D-Glucose (C); with MOPS	-1.6	+0.1	+0.1	-0.2	-0.1
phage	P. putida Sci Big MOI 0.1	-0.8	-0.1	-0.9	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	-0.8	-0.6	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.5	+0.2	-0.9	-0.4	+0.1
carbon source	p-Coumaric (C)	+0.4	+0.1	-1.6	-0.3	-0.0
pH	Growth at pH6 and (C) Trisodium citrate	-0.5	-0.1	-1.2	+0.4	+0.1
stress	Growth with Chloride 200 mM; with MOPS	+0.3	-0.4	-1.0	-0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.0	-0.4	+0.2	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	+0.2	+0.1	-1.1	-0.6	+0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.6	+0.5	-0.6	-0.2	-0.1
nitrogen source	nitrate (N)	+0.4	+0.4	-1.1	-0.2	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.9	-0.4	+0.3	+0.3	+0.2
nitrogen source	nitrogen source nitrite 1mM	+0.9	-0.6	-0.4	-0.1	-0.1
carbon source	carbon source Glycerol 108.6 mM	-0.5	+0.1	+0.9	-0.3	-0.5
pH	Growth at pH6 and (C) D-Glucose	+0.6	-0.5	-0.5	+0.4	-0.1
nitrogen source	D-2-Aminobutyric (N)	+0.5	-0.1	-0.8	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.4	-0.4	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.5	-0.5	-0.7	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.7	-0.3	-0.2	+0.6	-0.1
nitrogen source	2,6-diaminopimelic (N)	+0.3	-0.5	+0.5	+0.5	+0.2
carbon source	D-Glucose (C)	-0.7	+0.3	+0.6	+0.6	+0.2
temperature shift	Temperature shift 30_to_25; with MOPS	+0.5	+0.4	+0.6	-0.3	+0.1
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.5	+0.3	+0.9	-0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	-0.2	+0.9	+0.3	+0.1