Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0797	PP_0798	PP_0799	PP_5458	PP_0800
phage	P. putida Sci Big MOI 0.1	-0.4	-0.5	-0.3	N.D.	-0.3
carbon source	ferulate (C); with MOPS	-0.0	-0.2	-0.2	N.D.	-1.1
phage	P. putida Sci small MOI 0.1	+0.3	-1.1	-0.2	N.D.	-0.1
carbon source	ferulate (C); with MOPS	-0.3	-0.4	+0.1	N.D.	-0.3
temperature shift	Temperature shift 10_to_25; with MOPS	+0.1	-0.4	-0.1	N.D.	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9	-0.3	+0.0	N.D.	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.1	-0.1	+0.1	N.D.	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.4	-0.0	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.2	-0.2	N.D.	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.3	-0.5	+0.1	N.D.	-0.3
carbon source	Crotonic (C)	-0.6	+0.4	+0.1	N.D.	+0.1
carbon source	Tween 20 (C)	+0.5	+0.0	+0.3	N.D.	-0.7
carbon source	L-Leucine (C)	-0.8	+0.5	+0.0	N.D.	+0.5
carbon source	acetate (C)	+0.6	+0.1	-0.2	N.D.	-0.3
no stress control	Growth with no stress	+0.7	-0.1	-0.1	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.7	+0.2	N.D.	-0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6	-0.4	+0.1	N.D.	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.8	-0.1	-0.2	N.D.	+0.0
nitrogen source	nitrogen source nitrate 5mM	+0.7	-0.0	-0.1	N.D.	+0.3
carbon source	Valeric (C)	+0.5	+0.2	-0.2	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5	-0.1	+0.1	N.D.	+0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.7	+0.2	+0.2	N.D.	-0.1
pH	pH 8	+0.6	+0.1	+0.2	N.D.	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.0	-0.0	N.D.	+0.9
pH	pH 5	+0.4	+0.4	+0.0	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.2	+0.2	N.D.	+0.4
pH	pH 9	+0.4	+0.3	+0.2	N.D.	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.0	+0.0	N.D.	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.0	+0.2	N.D.	+0.1
pH	pH 7	+0.7	+0.2	+0.2	N.D.	+0.4