Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_0790 and PP_0791 are separated by 44 nucleotidesPP_0791 and PP_0792 are separated by 2 nucleotidesPP_0792 and PP_0793 are separated by 284 nucleotidesPP_0793 and PP_0794 are separated by 0 nucleotides PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389 _0790 PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210 _0791 PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208 _0792 PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345 _0793 PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293 _0794
Group Condition PP_0790 PP_0791 PP_0792 PP_0793 PP_0794
carbon source D-Fructose (C) -0.3 +0.2 +1.0 -5.8 -4.9
carbon source D-Fructose (C) -0.1 +0.2 +0.8 -5.8 -4.4
carbon source D-Mannose (C) +0.1 +0.3 +1.3 -5.1 -4.5
carbon source D-Fructose (C) -0.0 +0.2 +1.1 -4.0 -3.3
phage PUT 8 MOI 1 -0.1 +0.5 -0.1 +0.2 -5.9
phage P. put South MOI 0.1 -0.1 -0.1 -0.6 +0.3 -3.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.3 -0.1 -0.9 -1.5
phage P. putida South MOI 0.1 +0.1 +0.0 -0.4 +0.3 -3.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.4 -0.0 -1.1 -1.4
carbon source D-Glucose (C) -0.0 +0.1 +0.0 -0.0 -3.1
nitrogen source D-2-Aminobutyric (N) -0.1 -0.1 -0.5 -0.5 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.6 -1.3 +0.1 -0.6
nitrogen source Ammonium chloride and TNT (N) +0.0 +0.2 +0.8 -1.9 -1.8
carbon source 2-Methylbutanoic (C) -0.0 +0.3 -0.4 -0.2 -2.3
nitrogen source Ammonium chloride and TNT (N) +0.0 +0.1 +0.7 -1.7 -1.7
phage PUT8 MOI 0.1 -0.3 +0.2 -0.3 +0.6 -2.7
nitrogen source Ammonium chloride and TNT (N) -0.1 +0.0 +0.8 -1.5 -1.6
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.5 +0.2 -0.1 -1.2 -0.8
nitrogen source Ammonium chloride and TNT (N) +0.0 +0.2 +0.7 -1.5 -1.7
nitrogen source Urea (N) -0.5 +0.2 -0.1 -0.1 -1.8
phage PUT8 MOI 0.1 +0.3 -0.1 -0.3 +0.2 -2.4
phage P. putida PUT10 MOI 0.1 +0.3 +0.1 -0.1 +0.2 -2.3
phage P. putida South MOI 1 +0.1 -0.1 -0.2 +0.4 -2.0
phage P. putida PUT10 MOI 0.1 +0.2 -0.1 -0.4 +0.4 -1.7
pH Growth at pH6 and (C) D-Glucose +0.2 -1.0 +0.6 -0.7 -0.8
phage P. put South MOI 1 +0.1 -0.1 -0.2 +0.6 -2.0
nitrogen source D-2-Aminobutyric (N) +0.3 +0.5 -1.2 -0.6 -0.5
phage P. putida South MOI 10 +0.2 -0.1 +0.0 +0.5 -2.0
carbon source 1,5-Pentanediol (C) -0.1 +0.1 +0.9 +0.6 +1.2
carbon source 1,5-Pentanediol (C) -0.1 -0.0 +1.1 +0.4 +1.3
remove
PP_0790
plot		 remove
PP_0791
plot		 remove
PP_0792		 remove
PP_0793
plot		 remove
PP_0794
plot