Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0789 and PP_0790 overlap by 4 nucleotidesPP_0790 and PP_0791 are separated by 44 nucleotidesPP_0791 and PP_0792 are separated by 2 nucleotidesPP_0792 and PP_0793 are separated by 284 nucleotides PP_0789: PP_0789 - N-acetyl-anhydromuramyl-L-alanine-amidase, at 905,990 to 906,562 _0789 PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389 _0790 PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210 _0791 PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208 _0792 PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345 _0793
Group Condition PP_0789 PP_0790 PP_0791 PP_0792 PP_0793
phage PUT8 MOI 10 -7.9 +0.3 -0.0 -0.3 +0.1
phage PUT8 MOI 0.1 -7.8 +0.3 -0.1 -0.3 +0.2
phage P. put South MOI 0.1 -7.0 -0.1 -0.1 -0.6 +0.3
phage PUT8 MOI 0.1 -7.7 -0.3 +0.2 -0.3 +0.6
phage P. put PUT 10 MOI 0.1 -7.1 -0.2 +0.1 -0.1 +0.3
phage P. put PUT 10 MOI 1 -7.0 +0.2 -0.1 -0.2 +0.2
phage P. put South MOI 10 -7.3 +0.4 -0.3 -0.1 +0.5
phage P. putida South MOI 0.1 -6.7 +0.1 +0.0 -0.4 +0.3
phage P. put South MOI 0.1 -7.1 +0.2 +0.1 -0.3 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.8 -0.6 -0.2 +0.1 -0.0
phage P. putida South MOI 0.1 -6.6 +0.2 -0.1 -0.3 +0.3
phage P. put PUT 10 MOI 10 -7.1 +0.1 +0.0 -0.0 +0.6
phage PUT8 MOI 10 -5.8 -0.3 -0.1 -0.2 +0.1
temperature Growth at 25C -6.4 -0.1 -0.0 +0.3 -0.0
phage P. putida PUT10 MOI 1 -6.5 +0.4 -0.0 +0.0 +0.3
phage P. putida South MOI 1 -6.0 +0.1 -0.1 -0.2 +0.4
phage P. putida PUT10 MOI 10 -6.1 +0.3 -0.0 -0.4 +0.5
phage P. putida PUT10 MOI 10 -6.7 +0.3 +0.1 +0.3 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -5.3 -0.2 -0.2 +0.1 -0.1
phage P. putida PUT10 MOI 0.1 -5.6 +0.2 -0.1 -0.4 +0.4
phage P. putida PUT10 MOI 1 -5.8 +0.0 +0.1 -0.1 +0.5
phage P. put PUT 10 MOI 1 -5.7 +0.1 +0.0 -0.1 +0.4
carbon source D-Fructose (C) -0.1 -0.1 +0.2 +0.8 -5.8
phage P. putida South MOI 10 -4.6 +0.3 -0.3 -0.6 +0.2
phage P. put PUT 10 MOI 10 -5.6 -0.0 +0.2 -0.0 +0.5
phage P. putida PUT10 MOI 0.1 -5.5 +0.3 +0.1 -0.1 +0.2
carbon source D-Fructose (C) +0.1 -0.3 +0.2 +1.0 -5.8
phage P. put South MOI 1 -5.0 +0.1 -0.1 -0.2 +0.6
carbon source D-Mannose (C) -0.3 +0.1 +0.3 +1.3 -5.1
carbon source D-Fructose (C) +0.4 -0.0 +0.2 +1.1 -4.0
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