Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0769	PP_0770	PP_0771	PP_0772	PP_0773
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-2.0	+0.0	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-1.6	-0.2	+0.1	-0.5
carbon source	Valeric (C)	-0.5	-0.8	-0.3	-0.0	-0.6
pH	pH 4	+0.1	-0.5	-0.5	-0.6	-0.7
carbon source	D-Glucose (C) 10 mM	-0.3	-0.4	-0.3	-0.3	-0.7
r2a control	R2A control	-0.0	-0.3	-0.4	-0.9	-0.4
phage	P. put PUT 10 MOI 0.1	+0.3	-1.8	-0.6	+0.1	-0.1
carbon source	L-Leucine (C)	+0.0	-1.5	-0.7	-0.1	+0.3
carbon source	Myristic (C)	-0.6	-0.3	-0.6	+0.3	-0.3
nitrogen source	D-2-Aminobutyric (N)	+0.2	-0.8	-0.6	+0.2	-0.4
stress	R2A with Fusaric 480 ug/mL	+0.3	-0.9	+0.2	-0.3	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.8	-0.9	+0.4	+0.1	-0.0
pH	Valerolactone (C) pH 6.5	-0.8	-0.4	-0.4	-0.1	+0.4
carbon source	D-Glucose (C)	+0.0	+0.5	+0.1	-0.9	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4	-1.3	+0.1	+0.2	+0.2
carbon source	carbon source Bisabolol 45 mM	+0.6	-0.4	-0.5	-0.5	-0.3
carbon source	ferulate (C); with MOPS	+0.2	+0.1	-0.4	-1.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.1	+0.2	-1.1	-0.4
pH	Growth at pH7 and (C) Trisodium citrate	-0.6	-0.3	+0.6	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-1.2	+0.3	+0.4	-0.4
pH	pH 5	+0.8	-0.6	-0.0	-0.8	-0.2
carbon source	carbon source D-Glucose 55.5 mM	+0.8	-0.4	-0.1	-0.7	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.5	-0.4	+0.3	-0.3	-0.7
pH	pH 8	+0.5	+0.1	+0.1	-0.7	-0.6
nitrogen source	Propiolactam (N)	+0.4	-0.8	-0.6	+0.4	+0.0
phage	P. putida South MOI 10	+0.2	-0.3	-0.8	+0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-1.3	+0.8	+0.3	-0.1
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.5	+0.5	-0.1	-0.6	+0.4
carbon source	D-Glucose (C); with MOPS	-0.5	+0.7	+0.1	+0.8	+0.3
pH	Growth at pH8 and (C) D-Glucose	-0.1	+0.7	+0.1	+0.6	+0.5