Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0744	PP_0745	PP_0746	PP_0747	PP_0748
carbon source	3-methyl-1-butanol 0.1 vol% (C)	N.D.	-0.8	-1.9	-0.1	-0.1
carbon source	L-Phenylalanine 5 mM (C)	N.D.	-0.5	-0.4	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	-1.0	+0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	+0.2	+0.1	-1.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.6	-0.6	+0.2	+0.0
carbon source	1,3-Butandiol (C)	N.D.	-0.2	-0.2	+0.3	-0.7
nitrogen source	Ammonium chloride (N)	N.D.	-0.5	+0.3	-0.5	-0.1
phage	P. putida Sci Big MOI 0.1	N.D.	-0.1	+0.3	-0.8	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+0.5	+0.0	-0.8	-0.2
carbon source	Valerolactone (C)	N.D.	-0.3	-0.3	-0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	+0.3	-0.3	+0.5	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.1	-1.0	+0.3	+0.1
r2a control with 0.2% methanol	R2A control with 0.2% methanol	N.D.	-0.0	+0.4	-0.3	-0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	N.D.	-0.3	-0.4	+0.5	-0.1
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	N.D.	-0.2	+0.4	+0.1	-0.7
nitrogen source	D-2-Aminobutyric (N)	N.D.	-0.2	-1.0	+0.3	+0.6
pH	pH 8	N.D.	-0.2	+0.2	+0.4	-0.7
carbon source	carbon source Bisabolene 48.9 mM	N.D.	-0.5	+0.7	+0.0	-0.4
pH	pH 5	N.D.	-0.6	+0.6	+0.2	-0.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	N.D.	-0.6	+0.4	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	+0.0	+0.5	-0.5
carbon source	carbon source 4-vinylphenol 0.01 mM	N.D.	-0.7	+0.9	+0.5	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	N.D.	-0.6	+0.5	+0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	-0.4	+0.5	+0.6
carbon source	D-Glucose (C)	N.D.	-0.1	+0.3	+0.7	-0.4
carbon source	carbon source Glycerol 108.6 mM	N.D.	-0.4	+0.5	+0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.3	+0.2	+0.5
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	N.D.	+0.9	+0.2	+0.2	+0.1
phage	P. putida South MOI 0.1	N.D.	+0.2	+0.3	+0.6	+0.3
nitrogen source	NAG (N); with MOPS	N.D.	+0.7	+0.3	+0.4	+0.1