Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0739 and PP_0740 overlap by 10 nucleotidesPP_0740 and PP_0741 overlap by 11 nucleotidesPP_0741 and PP_0742 are separated by 103 nucleotidesPP_0742 and PP_0743 are separated by 186 nucleotides PP_0739: PP_0739 - deoxyribodipyrimidine photolyase, at 857,381 to 858,823 _0739 PP_0740: PP_0740 - Transcriptional regulator, MerR family, at 858,814 to 859,713 _0740 PP_0741: PP_0741 - conserved protein of unknown function, at 859,703 to 860,671 _0741 PP_0742: PP_0742 - conserved exported protein of unknown function, at 860,775 to 861,761 _0742 PP_0743: PP_0743 - conserved protein with NAD(P)-binding Rossmann-fold domain, at 861,948 to 862,853 _0743
Group Condition PP_0739 PP_0740 PP_0741 PP_0742 PP_0743
nitrogen source 2,6-diaminopimelic (N) -0.4 -0.7 -0.5 -0.6 +0.2
temperature Growth at 30C; with MOPS -0.6 -0.4 -0.6 -0.3 +0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.3 -0.2 -0.3 -0.8
nitrogen source Propiolactam (N) +0.0 -1.1 -0.9 +0.1 +0.4
carbon source Tween 20 (C) -0.1 -0.6 -0.5 -0.6 +0.6
carbon source L-Leucine (C) -0.1 +0.3 -0.1 -1.1 -0.2
nitrogen source Propiolactam (N) +0.1 -0.9 -0.7 -0.2 +0.6
carbon source Myristic (C) -0.3 -0.5 -0.1 -0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.5 -0.5 -0.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.7 -0.4 +1.0 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.3 +0.6 -0.3 -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 +0.3 -0.2 +0.3 -0.3
nitrogen source L-Methionine (N) -0.0 -0.6 -0.3 -0.1 +0.6
nitrogen source L-Leucine (N) +0.1 -0.6 -0.2 -0.2 +0.6
nitrogen source DL-2-Aminobutyric (N) -0.2 -0.3 -0.4 +0.2 +0.7
carbon source a-Ketoglutaric (C) -0.2 -0.2 -0.5 +0.1 +1.0
phage P. put South MOI 10 -0.5 +0.5 +0.4 -0.2 +0.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.1 +0.5 +0.6 -0.2 -0.6
nitrogen source D-2-Aminobutyric (N) +0.1 -0.7 +1.0 +0.3 -0.1
carbon source carbon source 4-vinylphenol 0.1 mM +0.4 +0.5 -0.3 -0.2 +0.3
carbon source 1,4-Butanediol (C) -0.3 -0.5 -0.5 +2.0 +0.1
carbon source 4-Hydroxyvalerate (C) (40mM) -0.1 -0.7 -0.5 +1.9 +0.3
carbon source 1,4-Butanediol (C) +0.0 -0.6 -0.2 +1.8 -0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.2 +0.9 +0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.3 +0.7 -0.1 -0.1
pH Growth at pH7 and (C) Trisodium citrate -0.0 +0.7 +0.4 +0.3 -0.2
carbon source Delta-Nonalactone (C) +0.1 -0.2 +0.2 +0.6 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.1 +0.1 -0.0 -0.4
carbon source 4-Hydroxyvalerate (C) (40mM) +0.1 -0.4 -0.3 +2.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.1 +0.2 +0.2 +0.3 +0.4
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