Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0730 and PP_0731 are separated by 12 nucleotidesPP_0731 and PP_0732 are separated by 804 nucleotidesPP_0732 and PP_0733 overlap by 4 nucleotidesPP_0733 and PP_0734 overlap by 1 nucleotides PP_0730: PP_0730 - conserved protein of unknown function, at 847,259 to 848,569 _0730 PP_0731: PP_0731 - phosphatidylcholine synthase, at 848,582 to 850,417 _0731 PP_0732: PP_0732 - Glutamyl-tRNA reductase, at 851,222 to 852,499 _0732 PP_0733: PP_0733 - Peptide chain release factor 1, at 852,496 to 853,578 _0733 PP_0734: PP_0734 - release factor-(glutamine-N5) methyltransferase, at 853,578 to 854,408 _0734
Group Condition PP_0730 PP_0731 PP_0732 PP_0733 PP_0734
carbon source carbon source 4-vinylphenol 0.1 mM -0.1 -0.4 N.D. N.D. N.D.
pH Growth at pH6 and (C) D-Glucose -0.3 -0.1 N.D. N.D. N.D.
carbon source carbon source 4-vinylphenol 0.01 mM -0.2 -0.3 N.D. N.D. N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM -0.1 -0.3 N.D. N.D. N.D.
stress Growth with Chloride 200 mM -0.2 -0.2 N.D. N.D. N.D.
pH pH 6 -0.2 -0.2 N.D. N.D. N.D.
nitrogen source no extra (N); with MOPS -0.1 -0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.2 N.D. N.D. N.D.
carbon source 2,3-Butanediol (C) +0.1 -0.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -0.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.2 +0.1 N.D. N.D. N.D.
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.2 -0.2 N.D. N.D. N.D.
carbon source Myristic (C) +0.3 -0.3 N.D. N.D. N.D.
nitrogen source Urea (N) -0.2 +0.2 N.D. N.D. N.D.
temperature Growth at 30C -0.2 +0.2 N.D. N.D. N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.2 +0.2 N.D. N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.2 +0.3 N.D. N.D. N.D.
carbon source ferulate (C); with MOPS -0.1 +0.3 N.D. N.D. N.D.
phage PUT 8 MOI 1 -0.1 +0.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 +0.3 N.D. N.D. N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.1 +0.4 N.D. N.D. N.D.
phage PUT8 MOI 10 -0.0 +0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.1 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.0 +0.4 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 +0.3 N.D. N.D. N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.1 +0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.3 N.D. N.D. N.D.
nitrogen source D-2-Aminobutyric (N) +0.3 +0.3 N.D. N.D. N.D.
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