Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0728 and PP_0729 are separated by 0 nucleotidesPP_0729 and PP_0730 are separated by 59 nucleotidesPP_0730 and PP_0731 are separated by 12 nucleotidesPP_0731 and PP_0732 are separated by 804 nucleotides PP_0728: PP_0728 - conserved protein of unknown function, at 844,839 to 846,008 _0728 PP_0729: PP_0729 - conserved protein of unknown function, at 846,009 to 847,199 _0729 PP_0730: PP_0730 - conserved protein of unknown function, at 847,259 to 848,569 _0730 PP_0731: PP_0731 - phosphatidylcholine synthase, at 848,582 to 850,417 _0731 PP_0732: PP_0732 - Glutamyl-tRNA reductase, at 851,222 to 852,499 _0732
Group Condition PP_0728 PP_0729 PP_0730 PP_0731 PP_0732
nitrogen source no extra (N); with MOPS -0.1 -0.1 -0.1 -0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.3 +0.0 +0.1 N.D.
pH Growth at pH6 and (C) D-Glucose +0.1 -0.0 -0.3 -0.1 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM +0.3 -0.1 -0.2 -0.3 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM +0.0 +0.1 -0.1 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 -0.0 -0.2 N.D.
pH Growth at pH6 and (C) D-Glucose -0.2 -0.3 +0.0 +0.1 N.D.
carbon source carbon source 4-vinylphenol 0.1 mM +0.2 +0.1 -0.1 -0.4 N.D.
carbon source L-Lysine (C) -0.2 -0.1 +0.2 -0.1 N.D.
phage P. putida Sci Big MOI 0.1 -0.3 +0.1 +0.1 -0.1 N.D.
pH pH 6 +0.2 -0.0 -0.2 -0.2 N.D.
carbon source 2,3-Butanediol (C) +0.1 -0.1 +0.1 -0.3 N.D.
carbon source Myristic (C) -0.1 -0.0 +0.3 -0.3 N.D.
carbon source ferulate (C); with MOPS +0.0 -0.2 -0.1 +0.3 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.3 +0.1 +0.1 +0.1 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.1 +0.1 -0.2 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 -0.3 -0.0 +0.4 N.D.
no stress control Growth with no stress +0.2 -0.1 -0.1 +0.2 N.D.
nitrogen source Urea (N) +0.1 +0.1 -0.2 +0.2 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.1 -0.1 -0.1 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -0.1 +0.4 -0.1 N.D.
phage PUT 8 MOI 1 -0.0 +0.2 -0.1 +0.3 N.D.
nitrogen source D-2-Aminobutyric (N) -0.5 +0.3 +0.3 +0.3 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.1 -0.1 +0.1 +0.3 N.D.
pH Growth at pH7 and (C) Trisodium citrate +0.1 +0.2 +0.2 -0.1 N.D.
nitrogen source Propandiamine (N) +0.3 -0.0 +0.1 +0.2 N.D.
stress Growth with Chloride 500 mM +0.3 +0.1 +0.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 +0.2 +0.1 +0.3 N.D.
stress Growth with Chloride 500 mM; with MOPS +0.2 +0.1 +0.1 +0.2 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.0 +0.1 +0.3 N.D.
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