Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0726	PP_0727	PP_0728	PP_0729	PP_0730
phage	P. putida PUT 7 MOI 1	-0.5	-0.1	-0.4	-0.1	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.0	-0.5	+0.1	-0.2	-0.0
nitrogen source	nitrate (N)	-0.3	-0.3	+0.1	-0.1	-0.1
pH	Growth at pH6 and (C) D-Glucose	+0.0	-0.3	+0.1	-0.0	-0.3
nitrogen source	D-2-Aminobutyric (N)	-0.1	-0.4	-0.0	+0.2	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.0	-0.3	-0.3	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.3	-0.1	-0.2	-0.0
nitrogen source	D-2-Aminobutyric (N)	-0.1	-0.4	-0.5	+0.3	+0.3
temperature shift	Temperature shift 30_to_25	-0.1	-0.2	+0.2	+0.1	-0.2
phage	P. putida Sci Big MOI 0.1	+0.0	-0.2	-0.3	+0.1	+0.1
carbon source	ferulate (C); with MOPS	-0.3	+0.4	+0.0	-0.2	-0.1
temperature	Growth at 30C	+0.2	-0.3	+0.1	+0.0	-0.2
nitrogen source	nitrate (N)	+0.1	+0.3	-0.2	-0.1	-0.2
pH	Valerolactone (C) pH 6.5	+0.1	-0.1	+0.0	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	-0.2	+0.2	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	+0.3	+0.1	-0.1	-0.0
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.3	-0.1	+0.3	-0.1	-0.2
pH	Growth at pH8 and (C) D-Glucose	+0.1	-0.2	+0.3	+0.1	-0.1
carbon source	D-Glucose (C); with MOPS	+0.1	-0.3	+0.2	+0.1	+0.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	-0.0	+0.1	+0.2	+0.2
carbon source	L-Lysine (C)	+0.1	+0.4	-0.2	-0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+0.3	+0.1	-0.1	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.5	+0.3	+0.0	+0.1
phage	P. putida Sci small MOI 0.1	+0.0	+0.5	+0.2	-0.1	+0.1
pH	pH 8	+0.2	+0.3	+0.3	+0.0	-0.0
carbon source	carbon source Glycerol 108.6 mM	+0.2	+0.2	+0.3	+0.0	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+0.4	+0.2	+0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.4	+0.1	+0.1	-0.1
stress	Growth with Chloride 500 mM; with MOPS	+0.2	+0.2	+0.2	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+0.2	-0.0	+0.2	+0.2