Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0710	PP_0711	PP_0712	PP_0713	PP_0714
nitrogen source	Propandiamine (N)	-0.3	-4.4	-0.2	+0.2	-0.2
nitrogen source	Propandiamine (N)	-0.6	-2.4	-0.1	-0.1	-0.1
pH	Growth at pH7 and (C) Trisodium citrate	-1.3	-2.2	+0.2	+0.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.2	-1.8	-0.3	+0.0	-0.0
carbon source	D-Glucose (C)	-0.8	-1.5	-0.2	+0.1	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.2	-1.5	-0.0	-0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	-1.4	+0.2	-0.4	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.0	-1.8	-0.3	-0.2	+0.2
nitrogen source	D-2-Aminobutyric (N)	-0.3	-0.7	-0.2	-0.3	-0.3
temperature	Growth at 25C	-0.8	-0.5	+0.0	-0.3	-0.3
phage	P. putida Missley MOI 0.1	+0.2	-1.5	-0.2	-0.3	-0.2
pH	Growth at pH6 and (C) D-Glucose	-1.4	-0.1	+0.3	-0.6	+0.1
phage	P. putida PUT 7 MOI 1	-0.4	-0.8	-0.4	+0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.4	-0.1	-0.9	+0.3
carbon source	ferulate (C); with MOPS	-1.0	+0.4	-0.0	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	-1.0	+0.1	-0.1	-0.5
nitrogen source	Urea (N); with MOPS	-1.0	+0.5	-0.1	-0.1	-0.2
carbon source	L-Lysine (C)	-0.3	-1.6	+0.2	+0.7	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.8	+0.1	+0.2	+0.3
carbon source	D-Glucose (C)	-0.4	+0.8	-0.2	+0.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3	+1.0	-0.1	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.7	-0.1	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.7	+0.3	+0.3	-0.2
nitrogen source	NAG (N); with MOPS	-0.4	+1.0	-0.3	-0.0	+0.1
nitrogen source	2,6-diaminopimelic (N)	+0.2	+1.0	+0.0	-0.3	-0.4
no stress control	Growth with no stress	-0.4	+1.1	-0.0	+0.2	-0.2
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.4	+0.9	-0.4	-0.0	-0.3
nitrogen source	nitrate (N)	-0.3	+1.3	-0.2	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.4	+0.1	+0.4	-0.0
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4	+1.0	-0.2	+0.4	-0.1