Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0699	PP_t70	PP_0700	PP_0701	PP_0702
pH	Growth at pH7 and (C) D-Glucose	-1.6	N.D.	+0.1	-0.2	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	N.D.	-0.5	-0.1	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6	N.D.	-0.9	+0.0	+0.0
nitrogen source	Urea (N)	-0.3	N.D.	-0.3	-0.0	-0.6
nitrogen source	D-2-Aminobutyric (N)	-0.7	N.D.	-0.3	-0.3	+0.1
pH	Growth at pH8 and (C) D-Glucose	-0.7	N.D.	-0.0	-0.4	+0.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.1	N.D.	-0.3	-0.4	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5	N.D.	-0.6	-0.0	+0.2
phage	P. putida Sci small MOI 0.1	-0.4	N.D.	+0.3	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.6	-0.3	+0.2
phage	P. putida Sci Big MOI 0.1	+0.3	N.D.	-0.5	-0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	N.D.	-0.4	+0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	N.D.	-0.9	+0.1	+0.2
temperature shift	Temperature shift 10_to_30; with MOPS	-0.2	N.D.	+0.3	-0.6	-0.0
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.3	N.D.	-0.3	+0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	N.D.	-0.9	+0.0	+0.4
nitrogen source	Urea (N); with MOPS	+0.3	N.D.	-0.4	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	N.D.	-0.0	+0.4	+0.1
temperature shift	Temperature shift 30_to_25; with MOPS	+0.6	N.D.	-0.4	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	-0.4	-0.2	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5	N.D.	+0.2	+0.1	+0.3
temperature shift	Temperature shift 30_to_10; with MOPS	+0.5	N.D.	-0.1	-0.4	+0.1
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2	N.D.	+0.2	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	N.D.	+0.4	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	N.D.	-0.1	+0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	N.D.	+0.4	-0.3	+0.2
pH	Growth at pH6 and (C) D-Glucose	+0.6	N.D.	+0.3	-0.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	N.D.	+0.4	+0.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	N.D.	-0.1	+0.3	+0.5
nitrogen source	2,6-diaminopimelic (N)	+1.1	N.D.	+0.3	-0.0	-0.2