Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0678 and PP_0679 are separated by 71 nucleotidesPP_0679 and PP_0680 are separated by 223 nucleotidesPP_0680 and PP_0681 are separated by 162 nucleotidesPP_0681 and PP_0682 are separated by 189 nucleotides PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048 _0678 PP_0679: PP_0679 - conserved exported protein of unknown function, at 793,120 to 793,635 _0679 PP_0680: PP_0680 - ATP-dependent protease-like protein, at 793,859 to 796,297 _0680 PP_0681: PP_0681 - conserved protein of unknown function, at 796,460 to 796,798 _0681 PP_0682: PP_0682 - conserved inner membrane protein of unknown function, UPF0114 family, at 796,988 to 797,476 _0682
Group Condition PP_0678 PP_0679 PP_0680 PP_0681 PP_0682
nitrogen source DL-2-Aminobutyric (N) -0.0 -0.3 -3.4 N.D. -0.7
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.2 -3.0 N.D. -0.3
carbon source 1-Pentanol (C) -0.0 -0.4 -1.7 N.D. -0.2
carbon source Delta-Nonalactone (C) +0.2 -0.3 -1.9 N.D. -0.3
nitrogen source Propandiamine (N) -0.0 -0.5 -0.8 N.D. -0.9
pH Growth at pH8 and (C) D-Glucose -0.1 -1.4 -0.1 N.D. -0.5
nitrogen source D-2-Aminobutyric (N) -0.2 +0.1 -1.5 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.5 -0.7 -0.6 N.D. +0.1
nitrogen source D-2-Aminobutyric (N) -0.1 +0.4 -1.3 N.D. -0.7
pH Growth at pH9 and (C) Trisodium citrate -0.4 +0.2 -0.7 N.D. -0.6
carbon source Delta-Decalactone (C) +0.2 +0.0 -1.3 N.D. -0.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.1 +0.0 -1.6 N.D. +0.1
stress Growth with Chloride 500 mM; with MOPS +0.0 +0.4 -0.3 N.D. -0.9
temperature Growth at 25C +0.3 -1.3 +0.0 N.D. +0.3
nitrogen source Urea (N); with MOPS -0.1 +0.6 -0.3 N.D. -0.8
pH Growth at pH6 and (C) D-Glucose +0.3 -0.6 -0.5 N.D. +0.3
carbon source carbon source 3-O-methyl-glucose 50 mM +0.2 +0.9 -0.0 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.1 +0.7 N.D. -0.6
phage P. putida Sci Big MOI 0.1 +0.4 +0.5 +0.3 N.D. -0.9
carbon source D-Lysine 10 mM (C) +0.3 +0.5 +0.2 N.D. -0.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +0.9 -0.4 N.D. -0.4
carbon source 1,3-Butandiol (C) +0.6 +0.7 -0.4 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.3 +1.0 N.D. -0.9
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.2 +0.7 +0.5 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +1.2 +0.5 N.D. -0.3
carbon source carbon source 3-O-methyl-glucose 10 mM +0.3 +1.1 +0.4 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.3 +0.6 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.2 +0.7 N.D. +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 +0.7 +0.3 N.D. +1.0
carbon source 4-Aminobutyric 10 mM (C) +0.5 +0.7 +0.5 N.D. +0.4
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