Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0675	PP_0676	PP_0677	PP_0678	PP_0679
pH	Growth at pH9 and (C) Trisodium citrate	-0.1	-0.2	-7.1	-0.0	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.1	-0.9	-0.1	-0.7
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.1	-0.3	-0.2	-0.8	-0.6
pH	Growth at pH8 and (C) D-Glucose	-0.2	+0.3	+0.0	-0.1	-1.4
stress	Growth with Chloride 200 mM; with MOPS	-0.1	+0.3	-1.8	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	-0.8	+0.3	-0.3	-0.8
pH	Growth at pH6 and (C) D-Glucose	-0.5	+0.8	-1.4	+0.2	+0.1
carbon source	Delta-Decalactone (C)	+0.3	+0.3	-1.1	-0.2	-0.1
temperature shift	Temperature shift 30_to_25	-0.2	+0.4	-0.7	-0.5	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.4	-0.6	+0.4	+0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.1	+0.4	+0.5	-0.8	-0.6
phage	P. putida Sci Big MOI 0.1	-0.5	-0.3	-0.5	+0.4	+0.5
temperature	Growth at 25C	-0.2	+0.1	+0.9	+0.3	-1.3
carbon source	Tween 20 (C)	+0.1	+0.5	-1.0	+0.3	+0.2
carbon source	carbon source Bisabolene 48.9 mM	-0.7	+0.4	+0.6	-0.3	+0.2
carbon source	Myristic (C)	+0.2	+0.6	-1.0	+0.3	+0.2
temperature shift	Temperature shift 30_to_21; with MOPS	-0.4	+0.3	+1.0	+0.0	-0.5
nitrogen source	Urea (N); with MOPS	+0.4	+0.5	-1.0	-0.1	+0.6
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.3	+0.3	-0.4	+0.2	+0.7
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.3	+0.6	+1.0	-0.3	-0.1
carbon source	carbon source D-Glucose 55.5 mM	-0.9	+0.6	+0.4	+0.1	+0.9
carbon source	carbon source Glycerol 108.6 mM	-0.3	+0.7	+0.7	+0.1	+0.3
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.3	+0.8	+0.1	+0.3	+0.6
pH	pH 9	-0.4	+0.1	+1.5	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.5	+0.3	+0.2	+1.2
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.3	+0.3	+0.7	+0.3	+1.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.2	+0.4	+0.9	+0.2	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	-0.0	+1.5	-0.1	+0.7
pH	pH 8	+0.1	+0.7	+0.7	+0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.5	+2.1	+0.3	-0.1