Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0651	PP_5453	PP_0652	PP_0653	PP_0654
temperature	Growth at 25C	+0.0	-5.4	-0.2	-5.7	-0.2
carbon source	D-Lysine 10 mM (C)	-0.1	-0.9	+0.1	-5.6	-0.1
carbon source	ferulate (C); with MOPS	-0.0	-1.0	+0.1	-5.2	-0.3
nitrogen source	Hydantoin (N)	+0.1	-3.5	-0.1	-0.9	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.2	-0.9	-0.2	-2.2	-0.2
carbon source	Valeric (C)	-0.3	-0.7	-0.5	-2.2	-0.1
carbon source	ferulate (C); with MOPS	+0.2	-3.0	-0.2	-0.9	+0.3
nitrogen source	nitrogen source nitrite 0.5mM	+0.1	-3.6	+0.2	-0.0	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.0	+0.1	-0.2	-3.1	-0.2
carbon source	acetate (C)	-0.1	-4.9	+0.2	+1.2	+0.4
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.1	-3.4	-0.3	+0.5	+0.2
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.1	-3.2	+0.3	-0.1	-0.1
temperature shift	Temperature shift 10_to_30; with MOPS	-0.0	-3.5	-0.3	+0.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-1.3	+0.3	-1.6	-0.7
temperature shift	Temperature shift 30_to_10	-0.2	-2.2	+0.1	-0.4	-0.2
carbon source	carbon source D-Glucose 55.5 mM	-0.2	-2.0	+0.1	-0.8	+0.2
temperature shift	Temperature shift 30_to_34; with MOPS	-0.1	-1.9	+0.3	-0.5	+0.3
phage	P. put South MOI 10	-0.2	+0.5	+0.1	-2.3	+0.1
carbon source	Hexanoic (C)	-0.1	-2.3	+0.0	+0.6	+0.0
nitrogen source	2,6-diaminopimelic (N)	+0.3	-0.5	+0.4	-2.0	+0.3
temperature shift	Temperature shift 30_to_25	+0.1	+0.8	+0.0	-2.3	+0.0
phage	P. putida South MOI 0.1	-0.2	-2.2	+0.2	+0.9	-0.0
temperature shift	Temperature shift 10_to_30; with MOPS	-0.1	+0.7	+0.1	-2.0	+0.1
nitrogen source	NAG (N); with MOPS	+0.2	+0.9	+0.2	-1.8	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.9	+0.3	-2.0	+0.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.2	+1.2	+0.2	-1.6	-0.1
carbon source	Myristic (C)	-0.2	-1.5	-0.0	+1.6	-0.1
carbon source	L-Alanine (C)	-0.2	+2.0	+0.1	-1.3	+0.0
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.1	+2.4	-0.1	-0.9	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	+1.5	-0.3	+1.7	-0.1