Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_t11	PP_0626	PP_0627	PP_0628	PP_5447
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0	-0.3	-4.2	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.7	-1.0	-2.8	-0.1
stress	Growth with Chloride 200 mM	-3.2	-0.1	+0.8	-0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.2	-0.4	-2.1	-0.6
carbon source	Myristic (C)	-0.4	-0.4	-2.2	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.0	-1.5	-0.9	+0.2
temperature	Growth at 25C	-2.2	+0.3	+0.2	-1.1	-0.1
pH	Growth at pH7 and (C) Trisodium citrate	-1.4	+0.1	-1.3	+0.3	-0.6
pH	pH 4	+1.3	-0.6	-3.5	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.1	+0.4	-0.3	-0.8	+0.3
phage	P. putida Sci small MOI 0.1	+1.0	-0.1	-1.5	-1.0	-0.4
pH	Growth at pH6 and (C) D-Glucose	+0.9	-0.1	-1.2	-1.6	+0.2
phage	PUT8 MOI 10	+0.2	+0.2	-2.2	-0.4	+0.5
pH	Growth at pH7 and (C) Trisodium citrate	-2.7	+0.2	+1.0	+0.3	-0.5
phage	P. putida South MOI 10	+1.0	-0.0	-2.1	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.6	-0.3	+0.6	+0.7	+0.6
pH	pH 8	+1.8	-0.4	-0.6	+0.4	-1.0
carbon source	carbon source 3-O-methyl-glucose 10 mM	+1.9	-0.5	-0.5	-0.1	-0.6
pH	pH 5	+1.9	-0.2	-1.5	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.7	+0.5	-0.9	-0.7	-0.1
carbon source	carbon source D-Glucose 55.5 mM	+3.3	-1.2	-1.7	+0.4	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+1.9	-0.3	-0.6	+0.6	-0.8
pH	Growth at pH6 and (C) D-Glucose	+1.3	-0.1	+1.2	-0.7	-0.8
carbon source	carbon source 4-vinylphenol 0.1 mM	+2.7	-0.4	-0.5	-0.1	-0.8
carbon source	carbon source Bisabolol 45 mM	+2.5	-0.5	-0.1	+0.1	-0.7
pH	pH 6	+2.7	-0.5	-0.1	+0.2	-0.7
carbon source	carbon source 3-O-methyl-glucose 50 mM	+2.1	-0.4	-0.1	+1.3	-0.5
carbon source	carbon source 4-vinylphenol 0.01 mM	+3.1	-0.0	-0.4	+0.0	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+2.8	-0.1	-0.0	+1.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.6	-0.1	+2.4	+0.7