Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_0612 and PP_0613 are separated by 76 nucleotidesPP_0613 and PP_0614 are separated by 1 nucleotidesPP_0614 and PP_0615 are separated by 106 nucleotidesPP_0615 and PP_0616 overlap by 1 nucleotides PP_0612: PP_0612 - FAD-dependent glycine/D-amino acid oxidase, at 717,333 to 718,430 _0612 PP_0613: PP_0613 - Amidase family protein, at 718,507 to 719,916 _0613 PP_0614: PP_0614 - putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1, at 719,918 to 721,195 _0614 PP_0615: PP_0615 - Branched-chain amino acid ABC transporter, ATP-binding protein, at 721,302 to 721,997 _0615 PP_0616: PP_0616 - Branched-chain amino acid ABC transporter, ATP binding protein, at 721,997 to 722,749 _0616
Group Condition PP_0612 PP_0613 PP_0614 PP_0615 PP_0616
carbon source ferulate (C); with MOPS -2.9 -0.5 -0.3 -0.7 -0.4
carbon source 2,3-Butanediol (C) -2.7 -0.1 +0.1 +0.0 -0.5
carbon source 2,3-Butanediol (C) -2.3 +0.1 -0.1 +0.0 -0.5
pH D-Glucose (C) pH 6 -2.0 +0.0 +0.5 -0.1 -1.0
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.4 +0.0 -0.7 -0.1 -0.2
pH D-Glucose (C) pH 6 -1.6 -0.1 -0.3 -0.2 -0.1
nitrogen source Urea (N) -0.7 +0.0 -0.7 -0.3 -0.5
carbon source ferulate (C); with MOPS -2.6 +0.2 +0.3 -0.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.1 +0.1 -1.3 -0.3 -0.6
stress Growth with Chloride 500 mM; with MOPS -0.8 -0.1 +0.3 +0.1 -1.3
nitrogen source D-2-Aminobutyric (N) -0.5 +0.1 -1.8 +0.1 +0.3
carbon source Crotonic (C) -1.7 -0.2 +0.1 +0.2 -0.1
carbon source ferulate (C); with MOPS -2.1 +0.1 +0.3 -0.3 +0.3
temperature shift Temperature shift 30_to_21; with MOPS -0.2 +0.3 -0.5 -0.2 -1.1
pH Growth at pH6 and (C) Trisodium citrate -0.3 +0.3 +0.2 -0.6 -1.1
pH Growth at pH6 and (C) Trisodium citrate -0.5 -0.0 +0.8 +0.1 -1.8
stress Growth with Chloride 500 mM; with MOPS -1.1 -0.1 +0.4 -0.3 -0.3
pH pH 5 -1.5 +0.3 -0.5 +0.3 -0.1
carbon source Mucic (C) -1.5 -0.2 +0.2 -0.1 +0.1
carbon source Vanillic Acid (C) -1.4 +0.1 +0.2 +0.3 -0.4
carbon source D-Glucaric (C) -1.3 -0.0 +0.3 +0.2 +0.3
pH pH 4 -1.1 +0.1 -0.6 +0.1 +0.9
carbon source Trisodium citrate 10 mM (C) -1.2 +0.1 -0.2 -0.0 +0.7
carbon source Mucic (C) -1.4 +0.2 +0.5 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.4 -0.9 -0.1 +0.6
stress Growth with Chloride 500 mM; with MOPS -1.3 -0.1 +0.1 +0.5 +0.3
nitrogen source D-2-Aminobutyric (N) +0.2 +0.4 -1.0 +0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +0.4 +0.4 -0.3 +0.7
nitrogen source Hydantoin (N) +0.1 -0.1 +0.0 +1.8 +0.9
nitrogen source Hydantoin (N) +0.1 +0.2 -0.1 +2.5 +1.3
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