Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0607	PP_0608	PP_0609	PP_0610	PP_0611
phage	P. putida Sci small MOI 0.1	-0.3	+0.7	+0.1	-5.5	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-3.6	-0.1	+0.2	-0.8	-0.2
carbon source	1,3-Butandiol (C)	-1.9	-0.6	-0.1	-0.0	-0.8
phage	P. putida Missley MOI 0.1	+0.0	+0.2	+0.2	-4.1	+0.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-1.1	-1.4	-0.2	-0.2	-0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-1.9	-0.7	+0.3	-0.8	+0.0
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-1.4	-0.6	-0.1	-1.0	+0.0
carbon source	L-Phenylalanine 5 mM (C)	-0.8	-1.2	-0.5	-0.5	+0.1
carbon source	carbon source 4-vinylphenol 0.1 mM	-1.2	-0.4	-0.2	-0.8	-0.2
nitrogen source	D-2-Aminobutyric (N)	-1.6	-0.3	-0.2	-0.3	-0.4
carbon source	D-Glucose (C)	-2.1	+0.0	-0.1	-0.3	-0.2
pH	pH 8	-1.2	-0.2	-0.3	-1.0	+0.2
carbon source	ferulate (C); with MOPS	-0.2	+0.6	-0.0	-1.1	-1.7
carbon source	ferulate (C); with MOPS	-0.5	-0.2	+0.2	+0.0	-1.7
nitrogen source	Ammonium chloride (N)	-1.9	-0.1	+0.1	-0.4	+0.2
stress	R2A with Fusaric 240 ug/mL	+0.3	-0.1	-0.0	-1.6	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.4	-0.1	-0.2	-0.5	+0.3
pH	Valerolactone (C) pH 6.5	-2.2	-0.1	-0.0	+0.3	+0.0
phage	PUT 8 MOI 1	-1.2	+0.5	-0.5	+0.1	-0.6
pH	Growth at pH7 and (C) D-Glucose	-0.4	+0.4	+0.7	-0.9	-1.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.8	+0.3	+0.3	-1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-0.6	+0.4	+0.3	+0.6
pH	Growth at pH6 and (C) D-Glucose	+1.1	-1.9	+0.3	-0.2	+0.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.7	-0.6	+0.1	-1.0	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4	+0.6	-0.2	-0.9	+0.8
nitrogen source	2,6-diaminopimelic (N)	-0.6	+0.6	-0.3	+1.1	-0.4
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.8	+0.4	-0.0	+1.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2	+0.1	+0.3	+0.7	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.9	+0.9	-0.2	-0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.1	+0.6	+1.7	+0.7